Glyma18g16830 - SoyBase

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Report for Sequence Feature Glyma18g16830

Feature Type:	gene_model
Chromosome:	Gm18
Start:	17530595
stop:	17534977
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05090	AT	Annotation by Michelle Graham. TAIR10: dentin sialophosphoprotein-related \| chr1:1463202-1465622 FORWARD LENGTH=706	SoyBase	E_val: 2.00E-42	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7LDS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GD3A n=1 Tax=Medicago truncatula RepID=G7LDS7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E163	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E163 related cluster n=1 Tax=unknown RepID=UPI000233E163	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g16830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16830

Paralog	Evidence	Comments
Glyma08g40610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g128300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g16830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g16830

Limit To All Plant Sequences

>Glyma18g16830.1   sequence type=CDS   gene model=Glyma18g16830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTCGAGATGCCATTGGATCAGATAAAGCACCTCCGAACTCTTCTCCGCAGAGAGGCCAATCTCTCGTGGTACGAGCCCGAGAAGGAGGAAAATCTCGCGCTCCCGAAGCTCCCTTCCGTCGCCGAAACCATCGCGAAGCTCGATTCCTCGCCGAACTACCTCCGCTGCAAGAATTGCAATGGCAGACTCATCCGCGACTTGCAATCTTCCGTCTGCGTTTTTTGCGGCACGAATCCCCAGAACGACCTCCCACCCGAACCCTTCAAATTCAAGAGCACCATTGGATATCGGTGGCTGCTCGAGTCGCTTCAACTCGATGGATCGGAGATGGTGGCACCAGTAGTGAATGAAAATGAATGGAACAGGGGGAGGAGTGAATCGAAAGATGAGATTCCCTTATCTGAACTGCTAGATTTGGAAATTAGATGGCCTTCTGAGGCTGAGAGAGTTCAGACAAGTACTTCGGATCCGGCCGTGTTTCAGGGGAAAAGTTCATTGAATTTGGCTGGAGTTGATCTTGATAGTTTTTTTGACCGTAGGGAATCTGATTCTGATATGTTTGAACAGAACTTGGCTTCTGAAAGACAAGTTGGTGGTGCTTCAGATAAGAGTTTGCAGGCTAGTGAAAATCTTAGTTTGTTTCAGAATGTCCAAGCTTCGGAAGTAGATGCTGGGTCTGTGGAAAATCAGAGTGGTAATTCATTTTCCAGTTGGGAGGCCAGCTTTACGTCTGCTAGTTCTGGTCCTGTTCATGAAGTATCCAAATCAGTTGATCATTCTAAAGTTGAATTGGATATGGCATCTGGATTCTCAAAACATTCTGTTGGTGTAAACAAGAATGATGATTTCAATCTTTCAGCATCCACAGAAGACGATTATTTTCAGGGTGATGGATGGAGTACTTCCAATTCAGAGGTACATTGCCAGACTGGGAAATCAGAATCAACCATGGATATTAGTGGTACAAAAACAGCAGAAAGTGCTAATGGTTCAAGTAGAAATCTTGACTGGATGCAAGATGATCTATGGCAAGGGAGTGATAACAAGACAACTGATACTGTGGCTACTGCTGAAGATAAAGATTCATTTGATGAATGGAATGATTTTACTGGCTCAGGTAGCACACAAGATCCTTCTAGTACTATTTCCAATTCAAAGACTAATGCCCAGACTGGAAATGTTGGATATTCTGTTGATTTTAATGTTACAAAAACATTAAAGGATGCTAATAGCTCTTCTAACAAGGATTTTGACTGGATGCAAGATCAGTGGCAAGATAACAATAACAAGACAACAAATACCATCAGTGCTAATGAAGCTGCTGACTCATTTGATGCATGGAATGATTTCACTGGCTCAGCCAATACACAACATTCGTACTTTGGTTTATCCAACTCAGAGATAACTGGCCAGGCTGGTAAATGTCAATTTACCCAGGACCATAATGATATGAAAACAACTGAAAGTGCTACTGGTTCTTCGAGTAATTTTGACTGGATGCAAGATAACCAATTGCAGGGGAGCGATAACAAGGCAACTGGTATTGCAACTACTAATGAAGTAGCTGATGAATTTGATGCATGGAATGATTTTACTGGCTCAGCTATTTCACAAAATCCTTCCAGTGGTGTTTCCAACTCTGCGATTACAGCCCAGATTGGGAAGTCAGAAATTACTGCTGATCTTAATGACATGAAAACAGAAGAGGGTACTAATGCTTCTTCTCACAGAAGTTTTGACTGGATGCAAGATGACCAATGGCAAGTCAGCAATAGTAAAACAAATGATACCAGGACTACTAATGATATTGATTCATTTGATCTTTGGAATGACTTTACTAGCTTGGCCAGTACACAAGATCATTCCAACAATGTTTTGAAGCAAACAGTAAATTCTGCAGAAAAGACCTCTGAAACGAATTTACTCAGTTCGTCAAACAGCTCACATGATAAAGATTTTAGTGGGTTTTCACAGCATGATCTATTTTCAGGACAGTTTGGTAGTTCATTGAGTTCTTTTCCAGCTACTTCTTCCAACAGGGTGGCTGAAGTGGATATCACGAGAGGAAACTCTGGAGATGTTTCCACTGCAGTAGGGTCAAAAGATGACGTAGAGATGTTGATGTCACAGATGCATGATCTCTCCTTTATGCTTGAGAATAATCTTTCAATTCCCCCAAAGTAA

Predicted protein sequences of Glyma18g16830

Limit To All Plant Sequences

>Glyma18g16830.1   sequence type=predicted peptide   gene model=Glyma18g16830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFEMPLDQIKHLRTLLRREANLSWYEPEKEENLALPKLPSVAETIAKLDSSPNYLRCKNCNGRLIRDLQSSVCVFCGTNPQNDLPPEPFKFKSTIGYRWLLESLQLDGSEMVAPVVNENEWNRGRSESKDEIPLSELLDLEIRWPSEAERVQTSTSDPAVFQGKSSLNLAGVDLDSFFDRRESDSDMFEQNLASERQVGGASDKSLQASENLSLFQNVQASEVDAGSVENQSGNSFSSWEASFTSASSGPVHEVSKSVDHSKVELDMASGFSKHSVGVNKNDDFNLSASTEDDYFQGDGWSTSNSEVHCQTGKSESTMDISGTKTAESANGSSRNLDWMQDDLWQGSDNKTTDTVATAEDKDSFDEWNDFTGSGSTQDPSSTISNSKTNAQTGNVGYSVDFNVTKTLKDANSSSNKDFDWMQDQWQDNNNKTTNTISANEAADSFDAWNDFTGSANTQHSYFGLSNSEITGQAGKCQFTQDHNDMKTTESATGSSSNFDWMQDNQLQGSDNKATGIATTNEVADEFDAWNDFTGSAISQNPSSGVSNSAITAQIGKSEITADLNDMKTEEGTNASSHRSFDWMQDDQWQVSNSKTNDTRTTNDIDSFDLWNDFTSLASTQDHSNNVLKQTVNSAEKTSETNLLSSSNSSHDKDFSGFSQHDLFSGQFGSSLSSFPATSSNRVAEVDITRGNSGDVSTAVGSKDDVEMLMSQMHDLSFMLENNLSIPPK*

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