SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01470 | AT | Annotation by Michelle Graham. TAIR10: homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272 | SoyBase | E_val: 1.00E-42 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0483 | KOG | Transcription factor HEX, contains HOX and HALZ domains | JGI | ISS | |
| PTHR24326 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24326:SF218 | Panther | JGI | ISS | ||
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| PF02183 | PFAM | Homeobox associated leucine zipper | JGI | ISS | |
| UniRef100_Q93XA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain leucine zipper protein HDZ2 n=1 Tax=Phaseolus vulgaris RepID=Q93XA4_PHAVU | SoyBase | E_val: 6.00E-145 | ISS |
| UniRef100_UPI000233E161 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E161 related cluster n=1 Tax=unknown RepID=UPI000233E161 | SoyBase | E_val: 0 | ISS |
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Glyma18g16390 not represented in the dataset |
Glyma18g16390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g40705 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g126800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g16390.2 sequence type=CDS gene model=Glyma18g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGTCAGAAGCTTCATGGGGGTTCAAGCATGACACTTTTGCTCCAAAAAGAAAGACTTCCATGCTCCCCTGAACTTATTCAATCTTTTTGTTTTCAAAACTCTGAACCTTCTTTCCAAGGTTCAAAATCCATGGCTAATGTTGTGAACGTCACGCATAGGCCCTTCTTTCAAGGGCCAGAGAAAGAAGAGAACGGCAATGATGCGGATTTTGAGGTGTGCCTCCATCAACCCGGTAAGACAAGGAGGCTCACAAGTGAACAAGTGCAGTTTCTTCAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCACGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTTGAGACAGACTATGGCATGTTAAAAGCTAGCTATCACGTACTCAAACGGGACTATGACAATCTCCTTCAAGAGAATGACAAGTTAAAGGAAGAGGTTAACTCTCTCAACAGACTGATTCCCAGAGAGCAAGAGGAACAGAATTCTGATGATACCTCTTGTGATACTGTCAACTCACGGCATAAAGAGCATAAAGAGCATAAAGATTTAATCATAAACACAGGTTCTGAGAATGGATCCGAAGTGCCACTTCCTGTTAAGGTAATAAACAAACATGAAGATGCTAATTCAGCTAAAAGTGATGTTCTTGATTCGGAGAGCCGACATTTCACTGATGGAAACCAATCCTCATATATGGAGCCTGCAGATTCCTCCCATGCTTTGGAACCAGACCACTCAGATTTCTCGCAAGATGAAGAAGACATCCTCAGCCAAAACATCTTGACCATGCCGTTCTTACCAAAGGTTGAAGATGTCTGCTATGAATATGATGAACCAAATGAAAATTCTTGCAGTTTCCGGTTCCCACTTGAAGATCAAGCCTTCTGCTTTTGGTCATATTGA
>Glyma18g16390.2 sequence type=predicted peptide gene model=Glyma18g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGQKLHGGSSMTLLLQKERLPCSPELIQSFCFQNSEPSFQGSKSMANVVNVTHRPFFQGPEKEENGNDADFEVCLHQPGKTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEVNSLNRLIPREQEEQNSDDTSCDTVNSRHKEHKEHKDLIINTGSENGSEVPLPVKVINKHEDANSAKSDVLDSESRHFTDGNQSSYMEPADSSHALEPDHSDFSQDEEDILSQNILTMPFLPKVEDVCYEYDEPNENSCSFRFPLEDQAFCFWSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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