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Report for Sequence Feature Glyma18g16383

Feature Type:gene_model
Chromosome:Gm18
Start:16993170
stop:16995902
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g16383
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40405AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16169315-16171153 FORWARD LENGTH=612 SoyBaseE_val: 2.00E-113ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF32Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_I1KXP7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXP7_SOYBN SoyBaseE_val: 4.00E-166ISS
UniRef100_Q84TA9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q84TA9_ORYSJ SoyBaseE_val: 4.00E-76ISS

Expression Patterns of Glyma18g16383
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16383 not represented in the dataset
Glyma18g16383 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16383
ParalogEvidenceComments
Glyma08g40720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16383 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g126700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g16383
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g16383
>Glyma18g16383.1   sequence type=CDS   gene model=Glyma18g16383   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGTGAAGTTGAATGAGGTGTCCATGGTTTTGGTTTTGTCTACGTGTACTCAGTTGGGGGCGTTGGATCATGAAAGATGGGTTCATGCTTATGTGGAGAGGTACAAGATTAGGATGATGGTGACACTGGGAGTTGCACTTGGTGACATGTATGTAGAAGCAAAGCTTCATGATGAATCAAAATTGATTCAAAGATGTTTTGATGATAGCAAAGATGATGACAAAGGTGATGACAAAAAGCTCAAAGGAAAGAAATGTTTATACTTGGAGAGTGCCATTGGTGGTTTGGCCATGAATGGTTTTGGTCAAGAGAGTTTGGATCTTTTTTATGATATAAAACGAGAGGGTGTTCAGCCAAATGGGGTCACCTTCATTTCTGTCTTGAAAGGGTGCAATGTGGTGGGGTTGATGGAGAAAGGTCGAAAGCATTTTGACTCGATGATGAACGTTTATGGGATTGACCCTCGACTTAAGCATTATGGCTTAATGGTTGATATGTATAGTAGAGCAGGGCATCTTGAGGAAGCTTTGAACTTCATCAATAGCATGCCTATGAAGCCTATGTTGGTGCATGGAGTGCTTTGCTTCATGCTTGTAGAATGTATTAAAACAAAGAACTCGGGTGAGCTTTCAAAGAGAAACATAGTGGAACTAGAAGACAAGAACGATTGTGCTTATGTCCTTAAATCGATGCTCCCTGGTTGTAGTGTCATAGAAGTTGATGGTGAAGTTCATGAGTTCATTGTTGGGGACAAGTCTCACCCAAGATATGGTGAAATTGAATTGAAGCTGGAAGAGATATCCAAGTGTCTTAGACTAGACGGGAATGTGGAGAAGGAGGATGCTTTGAGTAAACATAGTGAGAAGGTAGCCATTGCCTTTTGGCTAATTAGTTTGAAGGGTGTTCCCTTTAGGGTTGTTATGAACCTGAGGATTTGCTGGGATTGCCATAATGTAGCAAAACTGATATCCAAAATTTTTAATAAGGAAATTATTGTCAGAGACAGAAACAGGTTTCATCATTTTAAGGACGGTGAATACGCTTGTAAAGATTATTGGTAA
Predicted protein sequences of Glyma18g16383
>Glyma18g16383.1   sequence type=predicted peptide   gene model=Glyma18g16383   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGVKLNEVSMVLVLSTCTQLGALDHERWVHAYVERYKIRMMVTLGVALGDMYVEAKLHDESKLIQRCFDDSKDDDKGDDKKLKGKKCLYLESAIGGLAMNGFGQESLDLFYDIKREGVQPNGVTFISVLKGCNVVGLMEKGRKHFDSMMNVYGIDPRLKHYGLMVDMYSRAGHLEEALNFINSMPMKPMLVHGVLCFMLVECIKTKNSGELSKRNIVELEDKNDCAYVLKSMLPGCSVIEVDGEVHEFIVGDKSHPRYGEIELKLEEISKCLRLDGNVEKEDALSKHSEKVAIAFWLISLKGVPFRVVMNLRICWDCHNVAKLISKIFNKEIIVRDRNRFHHFKDGEYACKDYW*






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