SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| PTHR10178 | Panther | GAG/POL/ENV POLYPROTEIN | JGI | ISS | |
| PF00078 | PFAM | Reverse transcriptase (RNA-dependent DNA polymerase) | JGI | ISS | |
| UniRef100_B9I585 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I585_POPTR | SoyBase | E_val: 7.00E-98 | ISS |
| UniRef100_Q91DM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Genome polyprotein n=1 Tax=Petunia vein clearing virus isolate Shepherd RepID=POLG_PVCV1 | SoyBase | E_val: 1.00E-58 | ISS |
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Glyma18g16376 not represented in the dataset |
Glyma18g16376 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g126600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g16376.1 sequence type=CDS gene model=Glyma18g16376 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAAATTCTTGGATGGAACCATCCATCTTTGAAGATCCCTAAAGCACCTATACCTTGCATGATGTTTTCTTCCACATCCTATGATCAAGAGTTTCCATCTTTTGACAGAAAGACAGACCCAGTGACAAAAGTTTCAACTAAGCCCCACATAATTCCTACAGAATCTGATGAATTTAAAGAACAATATGAAGAATCTTCAACAGAAGCAGAAAAGTCTTATTCTGATGAAGAAGAAGAAGTTGGGTATATAGACATCTCAAACATTTTGATGGCTCGATCCACGGAAGAACCATTCTATGACTCTCCCGTAGAAGAAGAACCATTGATCTCAAGAATTGTTTTAGGAACTCTCCATCAGGAATTTATTGGAGAAGGGAAAATCATTGAAAGAAAGATCAAGCAAGAATTCTTTGAGATGAGGTGTTGTTCGTTAAAAATAAAAGATTTGGACAGACACTTTAAAAGAATGAATCAGAGATTTTATCTTCTCAATGGTCTCAATGATCCTAGTCTGAAGAATACTTATGTGGCTTCATTACCAGAAGAAATACAACCAGAGTTAAACAAAATGGTAGCAACTGCCCAAATGGTCTTTTCTACAATGTCCATGGGACAAATCCATCAATTCCCTCTAGAGGTCGTTGAAAAATTATGTAGACAACACCAATATTTCTATGATATCATGAACAAAAAAGTCAAGTATAGCAAAGCATGCAAAAAGCCTTACTTAGAGATTAAATGCAAAGAGAAGGCTTGCCACTACTCACCAAATAAAAAGAAAATCCTGCTAGGTGACACCAAGGGGAAAAGGAGGCCATTAAATTTTTTCAGAAAAAGTCGGAGGAAAGGAAAATCTAGGGGACAGAGATGCTTCATCTGCAACCAGATAGGGAATTTTGCAAAAAATTGTCCCAAGAAATCAGAAAAGGCCATCAGACTAATTTCTCATCTTCAGATTGATGAAGAAACTAAATTTGCCTTAAATCAAACAGATTCTTCTAATGAAGAGTCTTCAACTTCTCCAATCCCCGTCTTCTCTATCCAAGAAAAGCAGTCTATAAGACCTGCAATTCCTCAACCATGTGTTGAAATTCAAGTGCTGGAAAAAAAGTTTGAAAACCCTATCAAAGTTATTGCTTTCATAGATACTGGAGCTCAAAGGATGATGACGGATCTAGATATTCTTCCTGAAGAATATTGGAAAAAAGAAGTAGCTTATTTTGTAGCAACTGATGGGAAAATCTTCAGAACTGACCTAGTAACTCATGCTCCAATAGGCATCAAGTTTTTCCCTGATTGTATCATCTGGACCAAAGTCATTGGAAGTAAATTGTCTGATAGAGCACCACCAGAAGTTGGAGAGTTTAAACAAAAGATTTCTTCCCTATGTGCAGACAATCATGAAAATTTCAAGCATCCATATCCTTTATGGAAAAATAAAGAATACTTTGTTGATCTACTATTTAGATTAAATGAAGATATCAATCCAACAAAGGCAACCCATCCAGGGATGTCACCTTCAGATCTACCGGCAGCCAGACAAGAATGCCAAGATTTGCTAAGGCAAGGACTGATTGAGTCAACCCAGTCAAATTGGGCAAGCCAATCCTTTTGTGTGGAAAAAAGAGCTGAAAAATTAAGAGGAAAGAAAAGCACCCTCTCTCTCTTCGAGAAAACCATGACCATGATTTTTGAGCCTATTCTGGAAAACACCCTTGTTTACATAGATGACATCTTTCTCTTCTCAAAAGATATTGTCTCTCATAAAAACTTGTTGAATCAATTTTTTGAGATAGCCAATCAGCATGGGATCATGCTTTCAGAGAAAAAGATCCAGCTAACTCAATCCCAAATTGATTTCTTAGGGATGCATTTTTCCAAAGGTACCTATCAACCTCTGCCTCACATAGCTCAAGAGCTTTTAAATTTTCCTGATGAATTCTTCACAGTCAAATAA
>Glyma18g16376.1 sequence type=predicted peptide gene model=Glyma18g16376 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEILGWNHPSLKIPKAPIPCMMFSSTSYDQEFPSFDRKTDPVTKVSTKPHIIPTESDEFKEQYEESSTEAEKSYSDEEEEVGYIDISNILMARSTEEPFYDSPVEEEPLISRIVLGTLHQEFIGEGKIIERKIKQEFFEMRCCSLKIKDLDRHFKRMNQRFYLLNGLNDPSLKNTYVASLPEEIQPELNKMVATAQMVFSTMSMGQIHQFPLEVVEKLCRQHQYFYDIMNKKVKYSKACKKPYLEIKCKEKACHYSPNKKKILLGDTKGKRRPLNFFRKSRRKGKSRGQRCFICNQIGNFAKNCPKKSEKAIRLISHLQIDEETKFALNQTDSSNEESSTSPIPVFSIQEKQSIRPAIPQPCVEIQVLEKKFENPIKVIAFIDTGAQRMMTDLDILPEEYWKKEVAYFVATDGKIFRTDLVTHAPIGIKFFPDCIIWTKVIGSKLSDRAPPEVGEFKQKISSLCADNHENFKHPYPLWKNKEYFVDLLFRLNEDINPTKATHPGMSPSDLPAARQECQDLLRQGLIESTQSNWASQSFCVEKRAEKLRGKKSTLSLFEKTMTMIFEPILENTLVYIDDIFLFSKDIVSHKNLLNQFFEIANQHGIMLSEKKIQLTQSQIDFLGMHFSKGTYQPLPHIAQELLNFPDEFFTVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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