|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G48410 | AT | Annotation by Michelle Graham. TAIR10: Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048 | SoyBase | E_val: 6.00E-106 | ISS |
GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
GO:0009850 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin metabolic process | SoyBase | N/A | ISS |
GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
GO:0009955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adaxial/abaxial pattern specification | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
GO:0010589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf proximal/distal pattern formation | SoyBase | N/A | ISS |
GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
GO:0016441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing | SoyBase | N/A | ISS |
GO:0016569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification | SoyBase | N/A | ISS |
GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
GO:0035195 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by miRNA | SoyBase | N/A | ISS |
GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
GO:0048830 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adventitious root development | SoyBase | N/A | ISS |
GO:0048864 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stem cell development | SoyBase | N/A | ISS |
GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0019898 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane | SoyBase | N/A | ISS |
GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0035197 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: siRNA binding | SoyBase | N/A | ISS |
GO:0035198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: miRNA binding | SoyBase | N/A | ISS |
PTHR22891 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | JGI | ISS | |
PF02171 | PFAM | Piwi domain | JGI | ISS | |
UniRef100_B9N365 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Argonaute protein group n=1 Tax=Populus trichocarpa RepID=B9N365_POPTR | SoyBase | E_val: 1.00E-112 | ISS |
UniRef100_UPI000233E160 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E160 related cluster n=1 Tax=unknown RepID=UPI000233E160 | SoyBase | E_val: 2.00E-129 | ISS |
Glyma18g16345 not represented in the dataset |
Glyma18g16345 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g16345.1 sequence type=CDS gene model=Glyma18g16345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAATTTGAATTATAATGGATCACTTTATGGTGACCTCAAACGTATTTGTGAGACTGATCTAGGACTTGCTTCACAATGTTGCTTAACTAAGCATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAAGTTGGAGGGAGAAACACTGTACTGGTTGATGCGCTCTCTCGACGCATTCCCTTGGTCAGTGACAGACCTACAATTATTTTTGGAACCGATGTGACTCATCCACATCCTGGAGAGGATTCAAACCCATCAATTGCAGCAATAACTCATAGGCAGGAACTCATCCAGGATCTTTTCAAACAATGGCAAGATCCAGTTAGAGGAAGAGTGACTGGTGGAATGATCAAGGAACTTCTTATATCTTTTAGGAGAGCTATAGGACAAAAGCCCCAATGCATCATATTTTATAGTATTTTATTATCTATTTTATGTGATAATGGTTTTCAAATATCATGTGCAGGGATGGTGTTAGTGAGGGCATGTGCATCCCTGGAACCCAACTATCACGATAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGTACTGTTGTTGACTCCAAAATCTGCAATCCCACCGAATTTGACTTTTATCTCTGCAGCCATGTTGGAATACAGGGTACAAGCCGTCCTGCTCACTAG
>Glyma18g16345.1 sequence type=predicted peptide gene model=Glyma18g16345 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFNLNYNGSLYGDLKRICETDLGLASQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGTDVTHPHPGEDSNPSIAAITHRQELIQDLFKQWQDPVRGRVTGGMIKELLISFRRAIGQKPQCIIFYSILLSILCDNGFQISCAGMVLVRACASLEPNYHDKSSVDRSGNILPGTVVDSKICNPTEFDFYLCSHVGIQGTSRPAH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||