Glyma18g16270 - SoyBase

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Report for Sequence Feature Glyma18g16270

Feature Type:	gene_model
Chromosome:	Gm18
Start:	16675089
stop:	16677903
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62740	AT	Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family \| chr5:25201320-25202535 FORWARD LENGTH=286	SoyBase	E_val: 7.00E-175	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
KOG2620	KOG	Prohibitins and stomatins of the PID superfamily	JGI		ISS
PTHR10264	Panther	STOMATIN-RELATED	JGI		ISS
PTHR10264:SF25	Panther	INTEGRAL MEMBRANE PROTEINASE	JGI		ISS
PF01145	PFAM	SPFH domain / Band 7 family	JGI		ISS
UniRef100_C6TNR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TNR1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6UNT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hypersensitive-induced response protein n=1 Tax=Cucumis sativus RepID=Q6UNT3_CUCSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g16270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16270 not represented in the dataset	Glyma18g16270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16270

Paralog	Evidence	Comments
Glyma08g40791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g125600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g16270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g16270

Limit To All Plant Sequences

>Glyma18g16270.2   sequence type=transcript   gene model=Glyma18g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACATCATGCTTTTGATTGAGAAAACTGTTGATGATAAAACAGCCATATTCTGTTATGTTTTATTTTATTTTATTGACAAATTTGTTGTTCAGGGTTCCTGAATAATTAAAGATGGGACTGGCTCTGGGTTGTCTTCAAGTGGAGCAATCAACGGTAGCTATCAAAGAAGTGTTTGGAAAATTTGATGATGTGCTTGAACCTGGTTTCCACTGTGTGCCATGGTTCTTTGGCACTCAAGTGGCTGGTTACCTTTCTTTGCGCGTGCAACAGCTAGATGTTCGCTGCGAAACCAAGACAAAGGACAATGTTTTTGTCACTGTTGTTGCGTCTATCCAATATCGAGCGATGGCGGAAAGAGCGGTGGATGCTTTTTACAGGCTTAGCAATACCAGGGAACAGATTCAGGCCTATGTCTTTGATGTTATCCGGGCATGTGTTCCAAAGATGGATCTAGATTCCTCTTTTGAACAGAAGAAAGAAATTGCAAGAGCTGTTGAGGAAGAACTTGAAAAGGCAATGTCTGCTTATGGGTATGAGATAGTCCAGACTCTTATTGTGGATATTGAACCGGATGAGCGTGTGAAGAGAGCCATGAACGAGATAAATGCTGCTGCAAGGATGAGGGAAGCTGCAAATGAGAAAGCTGAAGCAGAGAAGATTCTGCAGATCAAAAAGGCAGAAGGAGATGCAGAGTCAAAGTATCTATCAGGGCTTGGAATAGCTCGTCAGCGTCAAGCCATAGTAGATGGTCTGAGGGACAGTGTGCTAGCCTTCTCAGAGAATGTCCCCGGGACAACATCTAAGGATGTCATGGACATGGTTTTGGTGACCCAATACTTTGACACGTTGAAGGAGATCGGTGCGTCCTCAAAATCCAATTCTATTTTTGTTCCACACGGACCAGGCACTGTGAGAGATATTGCTTCACAGTTTAGAGATGGTCTTCTTCAAGGAAAGGTGGCTCAGTCATGAAATCACACAATCACATTACTTGAACTATTAGGAATCTATCTTCTAGACTCTATCGATGTATACATTTTAATTTTGTCTGAGTGTTCAAGTTTGAACTAATTCGGTATGTTAATATGCCTTTCCATACCATTCATTGCCTTTCTATCCGTGCCCTCTTTTTTGAGTTGTGAATAGTCGAACATTGTGCTGTTCTTTTTTTCCTTCGAAATAAACATAATGGTGTTCGAATTTGCTTCGCTTAGGGCTTGTTCTTTTGTTTGCGTAGATGTTAAGCTTGTCCTTGACCTTTTCCATGAGATGGTAAGATAATAAGATTGAAGTTTATACAATAA

Coding sequences of Glyma18g16270

Limit To All Plant Sequences

>Glyma18g16270.1   sequence type=CDS   gene model=Glyma18g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTGGCTCTGGGTTGTCTTCAAGTGGAGCAATCAACGGTAGCTATCAAAGAAGTGTTTGGAAAATTTGATGATGTGCTTGAACCTGGTTTCCACTGTGTGCCATGGTTCTTTGGCACTCAAGTGGCTGGTTACCTTTCTTTGCGCGTGCAACAGCTAGATGTTCGCTGCGAAACCAAGACAAAGGACAATGTTTTTGTCACTGTTGTTGCGTCTATCCAATATCGAGCGATGGCGGAAAGAGCGGTGGATGCTTTTTACAGGCTTAGCAATACCAGGGAACAGATTCAGGCCTATGTCTTTGATGTTATCCGGGCATGTGTTCCAAAGATGGATCTAGATTCCTCTTTTGAACAGAAGAAAGAAATTGCAAGAGCTGTTGAGGAAGAACTTGAAAAGGCAATGTCTGCTTATGGGTATGAGATAGTCCAGACTCTTATTGTGGATATTGAACCGGATGAGCGTGTGAAGAGAGCCATGAACGAGATAAATGCTGCTGCAAGGATGAGGGAAGCTGCAAATGAGAAAGCTGAAGCAGAGAAGATTCTGCAGATCAAAAAGGCAGAAGGAGATGCAGAGTCAAAGTATCTATCAGGGCTTGGAATAGCTCGTCAGCGTCAAGCCATAGTAGATGGTCTGAGGGACAGTGTGCTAGCCTTCTCAGAGAATGTCCCCGGGACAACATCTAAGGATGTCATGGACATGGTTTTGGTGACCCAATACTTTGACACGTTGAAGGAGATCGGTGCGTCCTCAAAATCCAATTCTATTTTTGTTCCACACGGACCAGGCACTGTGAGAGATATTGCTTCACAGTTTAGAGATGGTCTTCTTCAAGGAAAGGTGGCTCAGTCATGA

>Glyma18g16270.2   sequence type=CDS   gene model=Glyma18g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTGGCTCTGGGTTGTCTTCAAGTGGAGCAATCAACGGTAGCTATCAAAGAAGTGTTTGGAAAATTTGATGATGTGCTTGAACCTGGTTTCCACTGTGTGCCATGGTTCTTTGGCACTCAAGTGGCTGGTTACCTTTCTTTGCGCGTGCAACAGCTAGATGTTCGCTGCGAAACCAAGACAAAGGACAATGTTTTTGTCACTGTTGTTGCGTCTATCCAATATCGAGCGATGGCGGAAAGAGCGGTGGATGCTTTTTACAGGCTTAGCAATACCAGGGAACAGATTCAGGCCTATGTCTTTGATGTTATCCGGGCATGTGTTCCAAAGATGGATCTAGATTCCTCTTTTGAACAGAAGAAAGAAATTGCAAGAGCTGTTGAGGAAGAACTTGAAAAGGCAATGTCTGCTTATGGGTATGAGATAGTCCAGACTCTTATTGTGGATATTGAACCGGATGAGCGTGTGAAGAGAGCCATGAACGAGATAAATGCTGCTGCAAGGATGAGGGAAGCTGCAAATGAGAAAGCTGAAGCAGAGAAGATTCTGCAGATCAAAAAGGCAGAAGGAGATGCAGAGTCAAAGTATCTATCAGGGCTTGGAATAGCTCGTCAGCGTCAAGCCATAGTAGATGGTCTGAGGGACAGTGTGCTAGCCTTCTCAGAGAATGTCCCCGGGACAACATCTAAGGATGTCATGGACATGGTTTTGGTGACCCAATACTTTGACACGTTGAAGGAGATCGGTGCGTCCTCAAAATCCAATTCTATTTTTGTTCCACACGGACCAGGCACTGTGAGAGATATTGCTTCACAGTTTAGAGATGGTCTTCTTCAAGGAAAGGTGGCTCAGTCATGA

Predicted protein sequences of Glyma18g16270

Limit To All Plant Sequences

>Glyma18g16270.1   sequence type=predicted peptide   gene model=Glyma18g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLALGCLQVEQSTVAIKEVFGKFDDVLEPGFHCVPWFFGTQVAGYLSLRVQQLDVRCETKTKDNVFVTVVASIQYRAMAERAVDAFYRLSNTREQIQAYVFDVIRACVPKMDLDSSFEQKKEIARAVEEELEKAMSAYGYEIVQTLIVDIEPDERVKRAMNEINAAARMREAANEKAEAEKILQIKKAEGDAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTLKEIGASSKSNSIFVPHGPGTVRDIASQFRDGLLQGKVAQS*

>Glyma18g16270.2   sequence type=predicted peptide   gene model=Glyma18g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLALGCLQVEQSTVAIKEVFGKFDDVLEPGFHCVPWFFGTQVAGYLSLRVQQLDVRCETKTKDNVFVTVVASIQYRAMAERAVDAFYRLSNTREQIQAYVFDVIRACVPKMDLDSSFEQKKEIARAVEEELEKAMSAYGYEIVQTLIVDIEPDERVKRAMNEINAAARMREAANEKAEAEKILQIKKAEGDAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTLKEIGASSKSNSIFVPHGPGTVRDIASQFRDGLLQGKVAQS*

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