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Report for Sequence Feature Glyma18g16236

Feature Type:gene_model
Chromosome:Gm18
Start:16635192
stop:16637927
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g16236
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54320AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:20114809-20118473 FORWARD LENGTH=430 SoyBaseE_val: 6.00E-90ISS
GO:0006109GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate metabolic process SoyBaseN/AISS
GO:0006110GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of glycolysis SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0008610GO-bp Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0019432GO-bp Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11795Panther PROTEIN KINASE JGI ISS
PTHR11795:SF332Panther JGI ISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9HV97UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HV97_POPTR SoyBaseE_val: 6.00E-143ISS
UniRef100_UPI000233E15EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E15E related cluster n=1 Tax=unknown RepID=UPI000233E15E SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g16236
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16236 not represented in the dataset
Glyma18g16236 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16236
ParalogEvidenceComments
Glyma08g40831 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16236 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g125200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g16236
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g16236
>Glyma18g16236.1   sequence type=CDS   gene model=Glyma18g16236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGTCCAAGGAGCCATAGGTTGGTCATTATAGATGGTAGTGATGTTATTAGCACTAAGTGTGCCAAAAGGCGGCGAAGAGATTCGTCTATGGCCGTGTTAGGTGGCAATGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGAGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGGAGGAGGAGCAGCGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCCCGTGCATATGACATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAATTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTACTGCTTCTCATGATCAAAAGCCTAGCACTGATGCTCAACTTTTTGCAACCTCTAACTCCATGCAAACAAGAGGGAACATTGAGGTATCCAACTCCAACATGCATTCATTCCCCTCAGGTGAATTGGACAGTACCAAGAAGCGAGACTTTTCCAAGTACATGAACCCTTTGAGTCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCGGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAGTGAAGAAGCTGATGTTGAATTGAAATATCCACAAGAGGGCAATGATGGGGTTGGAGGGATTTATGATAATGACAACACCAGTAACTCTTACTTTTGCTCTTCTAATATCAGCAGATTACCTAACTTGGAGTCATCAGAAGAGTGTCCATTGCCTATGTATCATGGAACTATGCAATCACTATGGAATAGTGCTTTCAACATGTCTAACTGA
Predicted protein sequences of Glyma18g16236
>Glyma18g16236.1   sequence type=predicted peptide   gene model=Glyma18g16236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELAPVKSELSPRSHRLVIIDGSDVISTKCAKRRRRDSSMAVLGGNGQQGEQLEEQKQLGGQSTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASHDQKPSTDAQLFATSNSMQTRGNIEVSNSNMHSFPSGELDSTKKRDFSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEADVELKYPQEGNDGVGGIYDNDNTSNSYFCSSNISRLPNLESSEECPLPMYHGTMQSLWNSAFNMSN*






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