SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g16224

Feature Type:gene_model
Chromosome:Gm18
Start:16632550
stop:16633975
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g16224
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20220AT Annotation by Michelle Graham. TAIR10: zinc knuckle (CCHC-type) family protein | chr5:6822208-6825771 FORWARD LENGTH=393 SoyBaseE_val: 1.00E-61ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR23002Panther ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN JGI ISS
PTHR23002:SF32Panther SUBFAMILY NOT NAMED JGI ISS
PF00098PFAM Zinc knuckle JGI ISS
UniRef100_D7LZZ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc knuckle (CCHC-type) family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZZ1_ARALL SoyBaseE_val: 1.00E-59ISS
UniRef100_I1KXQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXQ7_SOYBN SoyBaseE_val: 2.00E-114ISS

Expression Patterns of Glyma18g16224
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16224 not represented in the dataset
Glyma18g16224 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16224
ParalogEvidenceComments
Glyma08g40840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16224 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g125100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g16224
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g16224
>Glyma18g16224.1   sequence type=CDS   gene model=Glyma18g16224   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATTATCCATCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATTCTTCCAAAATTATGAAAGCTTACTATAGTGATCCAGTAAACAGTCAGAAAAGGAGCATGGCCTTGAAGGGTGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCACAGGAGACACAACTGTCCAGAACTCGAGGATAGCTTGGTTGATCGGCGATTCACGTGTAGGATCTGTGGGGATAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAAGATAAGCCTTAGCAATGGGAGAACAATAAAACACCATCGGTGTAAAGTATGCCACCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTCTTTTGTTGTTCCTAGTAAAAGAAGGAATGCAGCCTCTCGAAGACCATACAAATGTAGGTTGTGTAAGAAAGAGGGACATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAACACCCTCGAGATTAA
Predicted protein sequences of Glyma18g16224
>Glyma18g16224.1   sequence type=predicted peptide   gene model=Glyma18g16224   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIIHQDPKLQAQRVAAIKKAKGTVAARKHSSKIMKAYYSDPVNSQKRSMALKGVKFYCQNCGREGHRRHNCPELEDSLVDRRFTCRICGDKGHNRRTCRKLKISLSNGRTIKHHRCKVCHQFGHNRRTCPQAVPSFVVPSKRRNAASRRPYKCRLCKKEGHNIRTCPSRTVVTEHPRD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo