Glyma18g15950 - SoyBase

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Report for Sequence Feature Glyma18g15950

Feature Type:	gene_model
Chromosome:	Gm18
Start:	16127977
stop:	16132910
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02860	AT	Annotation by Michelle Graham. TAIR10: sucrose transporter 2 \| chr2:828546-832296 REVERSE LENGTH=594	SoyBase	E_val: 0	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0637	KOG	Sucrose transporter and related proteins	JGI		ISS
PTHR19432	Panther	SUCROSE TRANSPORT PROTEIN	JGI		ISS
PTHR19432:SF2	Panther	PROSTEIN PROTEIN	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_I1N171	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N171_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7FDE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SUT2 n=1 Tax=Medicago truncatula RepID=J7FDE7_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15950

Paralog	Evidence	Comments
Glyma08g40980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g123400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15950

Limit To All Plant Sequences

>Glyma18g15950.1   sequence type=CDS   gene model=Glyma18g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGGGGAAGTCTGATTTGGTGTCGATCCGCGTTCCCTACAAGAACCTCCACGACGATTCCTCCGCCCCCGAACTCGAACTCGTCGACGTCCACCACCGCGGCAACCACCGCAACTCGCCGCCGCCGAATCACTCTCCCTCGCCGCCGAACAGCAACAACGCTCCGCTGCTTCATCTCGTTCTCAGTTGCACCGTCGCCGCCGGCGTCCAATTCGGCTGGGCCTTGCAGCTCTCTCTCTTAACGCCCTACATTCAGACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTGGTTCAACCATGCGTTGGTATTTGGAGTGATAAATGCACTTCAAGGTTTGGCAGAAGACGACCATTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTGTGATATTAATCGGATTTTCTGCAGACATTGGATATGTATTAGGTGATACACACGAGCATTGCAGAACATTTAAAGGGACCCGAACAAGGGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGACCTTGCTAACAACACAGTGCAGGGGCCAGCTCGAGCACTTTTGGCTGATCTGTCTGGTCCTGATCAACGCAATGTTGCAAATGCTGTATTTTGCTCGTGGATGGCAGTTGGGAACATCCTAGGATATTCTTCAGGTGCTAGTGGAAAGTGGAACAACTGTCTATGTAATGTCCATTCTGCGTGTGCTTTTTCCTCTAATTCTATGGTTTTCTTTCTTGACACTAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAAGCGGCATTTCTTGTGGCGGTGGTGTTCCTGACATTATGCACACTAGTCACCCTATATTTTGCTGATGAGGTTCCACTTACTACTGCAAGTCAACATCATCACTTGTCAGATTCTTCTCCTTTACTGGATGAACAACAACAAAATGGTGTTGAATTTTCAAAATTAAAGCCTTCATCTGTTATGGATGAATCCAATAGTACGCAAACTGAGGATCACATTGAGAAAGATGCAGAGCTGAAACATGGGAATTTCAAAGCTGGGGAAGATCATGCTGAAAATGTAATGGATGGGCCTGGAGCAGTATTGGTAAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCTATGCATTCTGTCCTGGTTGTAATGGCTCTCACTTGGTTGTCATGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGCAGAGAAGTTTATCATGGTGATCCAAAAGGGGGCACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAAATGGATGGGTGCAAAATTAGTATGGGCACTGAGCAATTTTATCGTCTTTGTTTGCATGGCTAGCACTGCTATCATTAGTCTTATTTCCATAAGAGATTATTCTGGAGGGATAGAACACGTAATTGGAGCAAATGAAGCAATCAAGATTGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTCGCTGTTACAGCAGAGTTGACTGCTGATTCAGGAGGTGGCCAAGGATTGGCTATAGGAGTTCTTAATCTTGCAATTGTTATTCCTCAGATGATTATATCCCTTGGTTCTGGTCCTTGGGATGCTCTCTTTGGCGGTGGCAATATTCCTGCATTTGTTTTGGCTTCTTTGTGCGCCCTTGCTGGTGGTGTCATTGCAACTCTCAAACTGCCTGATCTCTCTAGTAGTTCATTCCAGTCAACAGGATTTCATATTGGCTAG

Predicted protein sequences of Glyma18g15950

Limit To All Plant Sequences

>Glyma18g15950.1   sequence type=predicted peptide   gene model=Glyma18g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTGKSDLVSIRVPYKNLHDDSSAPELELVDVHHRGNHRNSPPPNHSPSPPNSNNAPLLHLVLSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCTSRFGRRRPFILAGSLMICLAVILIGFSADIGYVLGDTHEHCRTFKGTRTRAALVFILGFWMLDLANNTVQGPARALLADLSGPDQRNVANAVFCSWMAVGNILGYSSGASGKWNNCLCNVHSACAFSSNSMVFFLDTRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTASQHHHLSDSSPLLDEQQQNGVEFSKLKPSSVMDESNSTQTEDHIEKDAELKHGNFKAGEDHAENVMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGGTSEVDLYDQGVREGAFGLLLNSVVLGISSFFIEPMCKWMGAKLVWALSNFIVFVCMASTAIISLISIRDYSGGIEHVIGANEAIKIASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVIPQMIISLGSGPWDALFGGGNIPAFVLASLCALAGGVIATLKLPDLSSSSFQSTGFHIG*

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