|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G18520 | AT | Annotation by Michelle Graham. TAIR10: tetraspanin11 | chr1:6375051-6376178 FORWARD LENGTH=271 | SoyBase | E_val: 2.00E-23 | ISS |
GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
PTHR19282:SF137 | Panther | JGI | ISS | ||
PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
UniRef100_G7JT30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein n=1 Tax=Medicago truncatula RepID=G7JT30_MEDTR | SoyBase | E_val: 1.00E-42 | ISS |
UniRef100_UPI0001D62D6A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D6A related cluster n=1 Tax=unknown RepID=UPI0001D62D6A | SoyBase | E_val: 1.00E-60 | ISS |
Glyma18g15935 not represented in the dataset |
Glyma18g15935 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.18g123300 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g15935.1 sequence type=CDS gene model=Glyma18g15935 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAAGTGGTTGGGTTGGTAATCTTAAGGCAGTAGTGATATTGGTGATTGTGATGGTGTGGAGGTTGAAGTGGAGAAGTTGTGTGCTTGATAAATTTGATATGGTAAAGGTGTTGAATATGATGAGTGTCGATGTTTTGGCACCCAACAATCACCTAAAGCAGGCCACTACGTCGTCGCGAGCATTGTTTCGCATAAGCAAAATTGTGGTTGGAGCCCTCAACGTGTTGTCCCTTCTGTTGGGCATCGGCTCCGCGGGGGAGCCCGCGTACATCCACGTCCATGGTGACTCCAATTGCCAGAAGGTGCTGCTGCAGGTTCCACTCCTCGTGGGTGGAATCTTCGTGGTGCTGGTCTCGGCCCTAGGAATCGCGGGGTCACTGTGCTGCGTGAACGGGGCGCTCTATGTGTACCTGTTGGTGATGTTCATGGTGATCGTGGGGCTGGCATTCTTCACCGTGTTCGAGCTCTTCGTCACCAACAGGAAGATGGGCCAGCAGGTTTCCAACAAGGGCTACGGCGAGTACAAGGTCACCAACTTCTCTCATTGGCTACAGCATATGGTTAACAACAAGAACTGA
>Glyma18g15935.1 sequence type=predicted peptide gene model=Glyma18g15935 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSGWVGNLKAVVILVIVMVWRLKWRSCVLDKFDMVKVLNMMSVDVLAPNNHLKQATTSSRALFRISKIVVGALNVLSLLLGIGSAGEPAYIHVHGDSNCQKVLLQVPLLVGGIFVVLVSALGIAGSLCCVNGALYVYLLVMFMVIVGLAFFTVFELFVTNRKMGQQVSNKGYGEYKVTNFSHWLQHMVNNKN*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||