SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g15770

Feature Type:gene_model
Chromosome:Gm18
Start:15900782
stop:15902578
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g15770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15740AT Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508 SoyBaseE_val: 6.00E-84ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PF10250PFAM GDP-fucose protein O-fucosyltransferase JGI ISS
UniRef100_I1KWK9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KWK9_SOYBN SoyBaseE_val: 1.00E-97ISS
UniRef100_Q93ZR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: O-fucosyltransferase-like protein n=3 Tax=Arabidopsis thaliana RepID=Q93ZR8_ARATH SoyBaseE_val: 2.00E-76ISS

Expression Patterns of Glyma18g15770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15770 not represented in the dataset
Glyma18g15770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g15770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g122900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g15770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g15770
>Glyma18g15770.1   sequence type=CDS   gene model=Glyma18g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGCGTGTGTGCGTGTTGACTTCAAAGATATATTTGATGTAGATCATTTCATTACCTCCTTGAGAGACGAGGTTCGAATAATAAAGATACTGCCACCTAAGGTCAAGAAAAGAGTTGAACTAGGATTATTATACTCAATGCCACCCATTAGCTGGTCTAATATCTCATACTATGAAAATCAGGTCCTTCCTCTATTGCTGAAACACAAGGTCATACAGCTAAATAGAACAGATGCTAGACTTGCAAATAATGGATTACCTGGTGAGATTCAAAAGCTACGATGCCGAGTAAACTTCAATGCTCTGAGGTTTACTACTCAGATAGAAGAACTTGGCAGAATGATAGTCAAGGTTTTGAGGGAAAAGCGGCCTTTCCTTGCACTTCATCTTAGATATGAGATGGACATGTTGGCCTTCTCTGGCTGTGCTCATGATTGTTACAGCAAAGAGGAGGAGGAACTCACAAGAATGAGGTGGATTTGA
Predicted protein sequences of Glyma18g15770
>Glyma18g15770.1   sequence type=predicted peptide   gene model=Glyma18g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCVCVCVCVCVRACVCACVRVDFKDIFDVDHFITSLRDEVRIIKILPPKVKKRVELGLLYSMPPISWSNISYYENQVLPLLLKHKVIQLNRTDARLANNGLPGEIQKLRCRVNFNALRFTTQIEELGRMIVKVLREKRPFLALHLRYEMDMLAFSGCAHDCYSKEEEELTRMRWI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo