Report for Sequence Feature Glyma18g15580
Feature Type: gene_model
Chromosome: Gm18
Start: 15768215
stop: 15770548
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g15580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G17420 AT
Annotation by Michelle Graham. TAIR10: Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026
SoyBase E_val: 7.00E-108 ISS
GO:0009832 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis
SoyBase N/A ISS
GO:0009834 GO-bp
Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis
SoyBase N/A ISS
GO:0010089 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem development
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0010400 GO-bp
Annotation by Michelle Graham. GO Biological Process: rhamnogalacturonan I side chain metabolic process
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0030244 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process
SoyBase N/A ISS
GO:0042546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0016759 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity
SoyBase N/A ISS
GO:0016760 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity
SoyBase N/A ISS
PTHR13301 Panther
X-BOX TRANSCRIPTION FACTOR-RELATED
JGI ISS
PTHR13301:SF24 Panther
JGI ISS
PF03552 PFAM
Cellulose synthase
JGI ISS
UniRef100_I0IJY6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase 3 (Fragment) n=2 Tax=Eucalyptus RepID=I0IJY6_9MYRT
SoyBase E_val: 2.00E-124 ISS
UniRef100_UPI000233EDA6 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EDA6 related cluster n=1 Tax=unknown RepID=UPI000233EDA6
SoyBase E_val: 2.00E-146 ISS
Expression Patterns of Glyma18g15580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma18g15580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma18g15580
Coding sequences of Glyma18g15580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g15580.1 sequence type=CDS gene model=Glyma18g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GATGATGAGAATGCTCAATTCTCAGTTGTTATTGCTGGTGGTCACTTTTGGCCTGTTAGTGGGGAGTTCCCAATAGCATCTCATTATGGGGATCAGATGTTAGCTTCTTCACTGCAAAATCGAGTGCACCCATATCCCGCGTTTGATCCTCGAAATGGAAAATGGGATGAAGCCAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGCAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCATTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCACGACTTGTTATCCTTGCCTTCTTCCTTCGATATAGACTTATGAATCCTATACATGATGCAATGGGACTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCAAGGATCCTTGATCAGCTTCCCAAATGGTATCCCATTGATCGAGAAACATACCTTGATCATCTTTCAATTAGGTATGAACGTGAAGGTGAACCTAACATGCTTGCTCCAGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAAGAACCTCCTTTGGTTATAGCCAACATTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGGTAAGATATTGTGTTACATTTTTGATGATGGAGCTTCAATGTGTACACTTTCCTTATGTTGGAATAAACCTCTCAATTGGAAGGGATCACCAGATCCCTGTAATGATGGTTGGGATGGAATCAAGTGCATCAACTCACGCGAGCTTTCAGAAGATATCGGGTTACTGTCTGAATTGGAGACGCTATACGTTTTTAATTTATTGCACTCAGCATGCTTTTGCGATAAATTATTTATGATCTTATCCCTTTTGATTTCCTTGTTTCTGATTTGTAGAGACCTCTCTCACAGTAAGGGCTTAACTGGTTCACTTCCACATTCAATTGGAAATTTGACCAAGTTGTCAAACTTTCAAAATTGTTCCAAATGCAATTGCTCAATTATCTCATTTTCCGCTTAA
Predicted protein sequences of Glyma18g15580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g15580.1 sequence type=predicted peptide gene model=Glyma18g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
DDENAQFSVVIAGGHFWPVSGEFPIASHYGDQMLASSLQNRVHPYPAFDPRNGKWDEAKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPIHDAMGLWLTSIICEIWFAFSRILDQLPKWYPIDRETYLDHLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVIANIVLSILAMDYPVGKILCYIFDDGASMCTLSLCWNKPLNWKGSPDPCNDGWDGIKCINSRELSEDIGLLSELETLYVFNLLHSACFCDKLFMILSLLISLFLICRDLSHSKGLTGSLPHSIGNLTKLSNFQNCSKCNCSIISFSA*