Glyma18g15570 - SoyBase

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Report for Sequence Feature Glyma18g15570

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15723023
stop:	15728880
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02870	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr2:838378-839781 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF218	Panther		JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7KCH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein SKIP11 n=1 Tax=Medicago truncatula RepID=G7KCH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N167	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N167_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15570

Paralog	Evidence	Comments
Glyma08g41020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g122000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15570

Limit To All Plant Sequences

>Glyma18g15570.1   sequence type=CDS   gene model=Glyma18g15570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAGGGTCGTTCCTGCGTGGTTCCGAGGTTGTTTCCCAGCTCTTGCCAGGCGGATGACAAGTGGCCTTTCATGACATACCTGCCAGACTTGGACATAAAGAATGGCAAGCGCCCTTTAGACCCCGATGGGGAGGAAGAACCCCAGTCAAGGAAGGCTAATAGGAGAGTGGATTCTCACCATCAAGGCAAGACAACTCAGTTTTTGTTTCAACAACAATCATGTCATGCTGATGATTCTGTTGTTCCGCAAATGGATTGGGATTGGAGGAAGGGTTGTGAGTCGTTGAGTAATTGGCAAAGAGTTGAGAAGACTGAAGCCTTTTCTGCCCAGCTATTGGATGAACGAGAGCCGCATTGCACTGGAGATTCATTGGTGGTGTCCACTGACCTTCAATCCAATAAACAGGAGGAGGATCAATCCGAGGATTCATCAGATTCTGGTGTTCAGCAATCCAATGAACAGCAGATGGAGCAGGAGGTGGAAGGGGATTTGTTGGATGCCAGTGACCAGCAGCCACTTGAAGATCAGGAAGAACATCATGGTGGGGATTCATCAGATTCCAGTTCTCTTTTGCCCTGCATGAACTGGGACAACTCAATTGCTTGTCTCAGCCACTGTTCCAGGTCTGATTATGGCTCTCTGGCCTCACTGAATAGGAGCTTTTGGAACACAATCCGAAGTGGTGAGCTGTACAGGTGGAGAAGACTGAATGGCATAATAGAACACTGGATTTATTTTTCCTGTGCCCTCCTTGAATGGGAGGCCTATGATCCAATTCGTGAACGGTGGATGCATTTACCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCGGATAAGGAATCTTTAGCCGTAGGAACTGAACTTCTTGTATTTGGCAGGGAGATGAGATCCCATGTCATTTACAGATACAGTCTTTTGACTAACTCATGGACATCTGGAATGAGGATGAATGCTCCAAGATGCTTATTTGGATCTGCTAGCTTGGGGGAGATTGCAATTTTGGCTGGCGGGTGCGATTTGGACGGTCATATCATGGACTCTGCTGAACTGTACAATTCTGAGAATCAAACCTGGGTACTACTCCCTAGCATGAACAAGCCGAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATTGGTGGAATTGGTGGAAAAGATTCTAAGCTTCTTACTTGTGGTGAGGAGTACAATTTACAAACTAGAACATGGACAGAAATTCCTAACATGTCCCCTGGACGTAGTGCTAGGGGAGCTGAAATGCCAGCGACAGCTGAAGCACCACCCCTGGTTGCCGTTGTAAATAATGAATTATATGCTGCTGATTATGCTGACACGGAGGTAAAAAAATACGACAAGGAGCGAAGAGTGTGGGTTACCATTGGGAGACTACCTGAGCGAGCAGTGTCAATGAATGGTTGGGGTCTTGCCTTCAGGGCATGTGGAGATATGCTTATTGTCATCAGTGGACCAAGGACTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTGCCCAGTGAAGGACCTCCACAGTGGAATCTACTCGCCAGAAAACGGTCTGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGTTGA

Predicted protein sequences of Glyma18g15570

Limit To All Plant Sequences

>Glyma18g15570.1   sequence type=predicted peptide   gene model=Glyma18g15570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGRSCVVPRLFPSSCQADDKWPFMTYLPDLDIKNGKRPLDPDGEEEPQSRKANRRVDSHHQGKTTQFLFQQQSCHADDSVVPQMDWDWRKGCESLSNWQRVEKTEAFSAQLLDEREPHCTGDSLVVSTDLQSNKQEEDQSEDSSDSGVQQSNEQQMEQEVEGDLLDASDQQPLEDQEEHHGGDSSDSSSLLPCMNWDNSIACLSHCSRSDYGSLASLNRSFWNTIRSGELYRWRRLNGIIEHWIYFSCALLEWEAYDPIRERWMHLPRMASNECFMCSDKESLAVGTELLVFGREMRSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDLDGHIMDSAELYNSENQTWVLLPSMNKPRKMCSGVFMDGKFYVIGGIGGKDSKLLTCGEEYNLQTRTWTEIPNMSPGRSARGAEMPATAEAPPLVAVVNNELYAADYADTEVKKYDKERRVWVTIGRLPERAVSMNGWGLAFRACGDMLIVISGPRTHGEGFIELNSWVPSEGPPQWNLLARKRSGNFVYNCAVMGC*

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