SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69710 | AT | Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:26222325-26226530 FORWARD LENGTH=1041 | SoyBase | E_val: 1.00E-54 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PF08381 | PFAM | Disease resistance/zinc finger/chromosome condensation-like region | JGI | ISS | |
| UniRef100_F4I287 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulator of chromosome condensation and FYVE zinc finger domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4I287_ARATH | SoyBase | E_val: 5.00E-52 | ISS |
| UniRef100_I1N165 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N165_SOYBN | SoyBase | E_val: 7.00E-176 | ISS |
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Glyma18g15534 not represented in the dataset |
Glyma18g15534 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g15534.1 sequence type=CDS gene model=Glyma18g15534 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGATTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTATGGATTCCAAGAAACACCTTTCAGTTTCTGAGCCCGCTGCAAGAATATCTTGTCAATCAATGTCACCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATAAATGATGATTTAAAGTACAGAAATGATATTTTAAGTCTAGAAGTTATAAGTTTAAGGACACTGGTTGAAGAGCTTACTCACAAGTCAAAAAGTTTAGAGGCTGAACATGAGAGAACATCAACGCAATTGAAGGAAATGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGCCATTAACTGCACAGTTGAAAGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTGACTCCAGTACAGAGCCCTTTGCTGAAAACACTAGTAGCATTCTACATAATTCCTTAGATGAGAGCCATATAAGAAACACCGTCATTCCCAAAAATGAAGGCAGCAGCATTGTAACAAATCTGATATTAGCTAATGGTACCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTATGTAAGTTTGTCCTCACAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTCCGCTTCAGTCGAAGGCATTTCACAGAAGAGCAAGCTGAAAAATGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATTGAATGCAAGAGAATCTGTTCCCTGA
>Glyma18g15534.1 sequence type=predicted peptide gene model=Glyma18g15534 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRDFAPSKSSNSLSMDSKKHLSVSEPAARISCQSMSPVSSKSSPRQSYEDINDDLKYRNDILSLEVISLRTLVEELTHKSKSLEAEHERTSTQLKEMTAVAADEAGKCKSAKEVIKPLTAQLKEMVERLPEGHNTDSSTEPFAENTSSILHNSLDESHIRNTVIPKNEGSSIVTNLILANGTKTQSGKAEWVVQDEPGVYVSLSSQPGGGNELKRVRFSRRHFTEEQAEKWWAENGTKILERHNIVALLNARESVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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