Glyma18g15517 - SoyBase

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Report for Sequence Feature Glyma18g15517

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15602312
stop:	15605879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15517

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19420	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain \| chr5:6547945-6552866 REVERSE LENGTH=1105	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_B9S8T2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9S8T2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N165	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N165_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15517

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15517 not represented in the dataset	Glyma18g15517 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15517

Paralog	Evidence	Comments
Glyma08g41046	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15517 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g15517

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15517

Limit To All Plant Sequences

>Glyma18g15517.1   sequence type=CDS   gene model=Glyma18g15517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATCATCAGAAAACCGCTCCTGGCGAGAGAGACATCGAGCAGGCAATTATATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCAAAGAGGGAAGCCAAAGTTCTGTCCATTTAGGCTTTCCAACGATGAGTCTCTACTCTTATGGTACTCTGGCAAGGACGAGAAACAGCTTAAGCTCAGTACAGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGCAAGGATAAAGATGACGCTGAAATCTGGTTTCCTGGTCTTAAGGCAATAGTTACTCGAGGTAACAACCGCAAGTGGAGATTTGAATCAAGAACTGACGATAGTCTGTATTCTGATAGTCCAAAATCTGGCACACGAAGATCCACTCCGTCCATTGCACCATTCTCTGACCCTGGGGATGCTGGTGGAGGTTTTATTGACTTGCAAAATAGATGGATAAAGGCTTTCTCTGAAATAATTTCTTACTCTGCAGCTAGCAAGAGTTCCAGTCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGGATCGCCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTCATTGACACCCTCGGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTAGGTGGTAACTTGGAGGGCTTACGTGTATTATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAGATCTTAGTAGCGCAAATATTCCTCGGGAAGTAGAAAATTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGGTAAATGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACGTTTATATACAATGGGAAGTACAGCGTATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACATGTGTTGAAGATATAATTTCTGATAGTTTGTAG

Predicted protein sequences of Glyma18g15517

Limit To All Plant Sequences

>Glyma18g15517.1   sequence type=predicted peptide   gene model=Glyma18g15517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADHQKTAPGERDIEQAIISLKKGSYLLKYGQRGKPKFCPFRLSNDESLLLWYSGKDEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDDAEIWFPGLKAIVTRGNNRKWRFESRTDDSLYSDSPKSGTRRSTPSIAPFSDPGDAGGGFIDLQNRWIKAFSEIISYSAASKSSSQAESLANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIADGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGMNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGNEVSHWIPKKVGGNLEGLRVLYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLSSANIPREVENLKGLRTTRVACGVWHTAAVVEVVNESVESSTRSSSGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGRLYTMGSTAYGQLGCPASDGKVPTCVEDIISDSL*

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