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Report for Sequence Feature Glyma18g15500

Feature Type:gene_model
Chromosome:Gm18
Start:15564145
stop:15565226
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g15500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21940AT Annotation by Michelle Graham. TAIR10: shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304 SoyBaseE_val: 4.00E-34ISS
GO:0006744GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process SoyBaseN/AISS
GO:0019632GO-bp Annotation by Michelle Graham. GO Biological Process: shikimate metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004765GO-mf Annotation by Michelle Graham. GO Molecular Function: shikimate kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
UniRef100_I1JY84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JY84_SOYBN SoyBaseE_val: 3.00E-49ISS
UniRef100_Q6PLR3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Shikimate kinase (Fragment) n=1 Tax=Cucumis sativus RepID=Q6PLR3_CUCSA SoyBaseE_val: 3.00E-35ISS

Expression Patterns of Glyma18g15500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15500 not represented in the dataset
Glyma18g15500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g15500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g15500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g15500
>Glyma18g15500.1   sequence type=CDS   gene model=Glyma18g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGGTGTTGCAGATGTTGTCATTAATGCACAAACATGTTATTTCTATCGATGGAGGTGTTGTTCTAATGCCCAACAATTGGAAATATATGCGTAGGGGGATTAGTAGAATAACAATTATAGGAACTGATTCTCGCCCACTCCTACATTCTGAAGCAAGAAATGCATACATGGAGACTATCAAGTGTTTGTCTATCATTTGTGAAGAAAGAAGTGAAGCATATGCAAATGTCAATGTCAAAGTCTCCTTGGAAAATATGGCAGCAAAATTAAGCCAAAGAGACGTGTCAGATTTTTCTCCAACTGCTATTGCTATGGAGGCACCGGAACAAATCAAATGCTTTCTTATAAGTGAAGATGGGTTTTAA
Predicted protein sequences of Glyma18g15500
>Glyma18g15500.1   sequence type=predicted peptide   gene model=Glyma18g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IKVLQMLSLMHKHVISIDGGVVLMPNNWKYMRRGISRITIIGTDSRPLLHSEARNAYMETIKCLSIICEERSEAYANVNVKVSLENMAAKLSQRDVSDFSPTAIAMEAPEQIKCFLISEDGF*






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