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Report for Sequence Feature Glyma18g15421

Feature Type:gene_model
Chromosome:Gm18
Start:15511509
stop:15514520
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g15421
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69690AT Annotation by Michelle Graham. TAIR10: TCP family transcription factor | chr1:26216449-26217426 FORWARD LENGTH=325 SoyBaseE_val: 6.00E-45ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010229GO-bp Annotation by Michelle Graham. GO Biological Process: inflorescence development SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11584Panther SERINE/THREONINE PROTEIN KINASE JGI ISS
PTHR11584:SF275Panther SUBFAMILY NOT NAMED JGI ISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_B5G4Z3UniRef Annotation by Michelle Graham. Most informative UniRef hit: BHLH (Fragment) n=1 Tax=Gossypium barbadense RepID=B5G4Z3_GOSBA SoyBaseE_val: 4.00E-57ISS
UniRef100_I1N163UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N163_SOYBN SoyBaseE_val: 3.00E-148ISS

Expression Patterns of Glyma18g15421
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15421 not represented in the dataset
Glyma18g15421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15421
ParalogEvidenceComments
Glyma08g41070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15421 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g121400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g15421
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g15421
>Glyma18g15421.2   sequence type=transcript   gene model=Glyma18g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCTCTCTCTAATCCTTTTTCTCTGTAAAGAGAAACAACTCAACAAACTGCCACCTCCATACCAAAGGAAAATCGATGCTCCACAAAACACACAGACCCACTCCCTAGTCCACTTACCCACTGAGAGAGATATCAACACAGCATCATTGTCTTCTCTTAACACTGTAACAAACCCCACTCAATTTTTTTATTTTTTAAAATCGTTAGGGCCAGAGGTGGTTTGTTAGTGTGTTATATCTGTATATGATACTGCATTGTCATGGAAGAACAAAGAGTTCATCACGATGAAAACGTGACTCGCAAGCCCAATTTCCCGCTACAGCTGCTGGAGAAAAAGGATGAGGGACCGCCGCCGCCGCCGAGCGCAGCCAAGGCGAAGCGAGCACCGACGAAGGACAGACACACGAAGGTGGAGGGGCGGGGGCGGCGGATCCGGATGCCGGCGGCGTGCGCGGCGAGGGTGTTCCAGCTGACGCGCGAGCTCGGCCACAAGTCCGACGGTGAGACCATCGAGTGGCTGCTCCGGGAGGCCGAGCCCGCCGTCATCTCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACTTCGCTCAACGTCTCCCTCCGCAGCTCCGGCTCCTCCCAGTCCCACTACTTCCTCAACCGCCACAACAATCTTCACAATCACAACACCAACAACTATCCCTTCTTCACAACAACAACACCACCCGAATTTTCTTCTTCAGGATCGTATTTTAAATCACACCCAAGTTTTAGTCTTATGCAAAATTCTAGAAGGTTCTCGCGAAAGAGGAGGCATGAGGTGATTTCGCACGTGGGGAATTATTGCTTGTCGCAGATGTGTACGGACTCCGTTCCCGCCATGATGAGTGGTGCTGATTCAGTTTGGGCGATTCCCTCCGTGGCTTCTTCTTCTGCGAGTGGCATTCATTTTACGAATTTTGCTTCGCTGTTGACCGGTCAACACGTGGGTGGTGCAATGGTGAGTAGTGAAACAAACTTCAATGTGCTTGCAACGCTTAATGCGTATTCCGGCCAACAACCACATCATCGCCATGAAGGAGAAGAAACAAACAACTAGCTAATCTATCAATCATGTTGGGAATTATGTGTGTGTACTACATGGCTAGCTAGATAGGGACCATTTCTTGATGTTTTGTACGGAAAGAGTGGATTAATGAAACGTACCTGACCAGAGTTTCATATCTTTCTGGCCATTTGAGCTCTTTCTTAACCTGAGGTGGACGGTGGTGATACTATATACTATAGTGACCCCTCAGGGTGATCATTTTGCCTAAAATCAATGAGAGTCACAGAGAGTAACCAAGAATTCCATTAATTCTGTTATAAAATATGGAAGCTAGTATAGCTATACCTTGGCACCATGGCTAGGTGGGAGGGTCAGTGGTAAATGATCGACTTTCTAGGGTAGCTATATATATGAGCTCCTCACTCATCACCCTTTTGTGTACCTTCCCTAGCTCCTCAATTATTATGAACCGTTGTTTTCACAAGTAACTGAAATAAGTTAAATGAGCTGTAGCTACTGCAACATTAGGTTTTGTGAAATGACAAAGGGAATCACTTATTTTGTGACTCTAAGCCTCAGCTAGCCCCACTTGCTTTATCATTGCTTCAATCAGAATATTGATTTCAAGCTTTTAGACAACATACTGTTGGTTTTCGTTTTGGCATGCATGTATTATTATGATCTCACAGATAGAGGATATAACATAATTATATCAAAAG
Coding sequences of Glyma18g15421
>Glyma18g15421.1   sequence type=CDS   gene model=Glyma18g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAACAAAGAGTTCATCACGATGAAAACGTGACTCGCAAGCCCAATTTCCCGCTACAGCTGCTGGAGAAAAAGGATGAGGGACCGCCGCCGCCGCCGAGCGCAGCCAAGGCGAAGCGAGCACCGACGAAGGACAGACACACGAAGGTGGAGGGGCGGGGGCGGCGGATCCGGATGCCGGCGGCGTGCGCGGCGAGGGTGTTCCAGCTGACGCGCGAGCTCGGCCACAAGTCCGACGGTGAGACCATCGAGTGGCTGCTCCGGGAGGCCGAGCCCGCCGTCATCTCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACTTCGCTCAACGTCTCCCTCCGCAGCTCCGGCTCCTCCCAGTCCCACTACTTCCTCAACCGCCACAACAATCTTCACAATCACAACACCAACAACTATCCCTTCTTCACAACAACAACACCACCCGAATTTTCTTCTTCAGGATCGTATTTTAAATCACACCCAAGTTTTAGTCTTATGCAAAATTCTAGAAGGTTCTCGCGAAAGAGGAGGCATGAGGTGATTTCGCACGTGGGGAATTATTGCTTGTCGCAGATGTGTACGGACTCCGTTCCCGCCATGATGAGTGGTGCTGATTCAGTTTGGGCGATTCCCTCCGTGGCTTCTTCTTCTGCGAGTGGCATTCATTTTACGAATTTTGCTTCGCTGTTGACCGGTCAACACGTGGGTGGTGCAATGGTGAGTAGTGAAACAAACTTCAATGTGCTTGCAACGCTTAATGCGTATTCCGGCCAACAACCACATCATCGCCATGAAGGAGAAGAAACAAACAACTAG

>Glyma18g15421.2   sequence type=CDS   gene model=Glyma18g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAACAAAGAGTTCATCACGATGAAAACGTGACTCGCAAGCCCAATTTCCCGCTACAGCTGCTGGAGAAAAAGGATGAGGGACCGCCGCCGCCGCCGAGCGCAGCCAAGGCGAAGCGAGCACCGACGAAGGACAGACACACGAAGGTGGAGGGGCGGGGGCGGCGGATCCGGATGCCGGCGGCGTGCGCGGCGAGGGTGTTCCAGCTGACGCGCGAGCTCGGCCACAAGTCCGACGGTGAGACCATCGAGTGGCTGCTCCGGGAGGCCGAGCCCGCCGTCATCTCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACTTCGCTCAACGTCTCCCTCCGCAGCTCCGGCTCCTCCCAGTCCCACTACTTCCTCAACCGCCACAACAATCTTCACAATCACAACACCAACAACTATCCCTTCTTCACAACAACAACACCACCCGAATTTTCTTCTTCAGGATCGTATTTTAAATCACACCCAAGTTTTAGTCTTATGCAAAATTCTAGAAGGTTCTCGCGAAAGAGGAGGCATGAGGTGATTTCGCACGTGGGGAATTATTGCTTGTCGCAGATGTGTACGGACTCCGTTCCCGCCATGATGAGTGGTGCTGATTCAGTTTGGGCGATTCCCTCCGTGGCTTCTTCTTCTGCGAGTGGCATTCATTTTACGAATTTTGCTTCGCTGTTGACCGGTCAACACGTGGGTGGTGCAATGGTGAGTAGTGAAACAAACTTCAATGTGCTTGCAACGCTTAATGCGTATTCCGGCCAACAACCACATCATCGCCATGAAGGAGAAGAAACAAACAACTAG
Predicted protein sequences of Glyma18g15421
>Glyma18g15421.1   sequence type=predicted peptide   gene model=Glyma18g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEQRVHHDENVTRKPNFPLQLLEKKDEGPPPPPSAAKAKRAPTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLREAEPAVISATGTGTIPANFTSLNVSLRSSGSSQSHYFLNRHNNLHNHNTNNYPFFTTTTPPEFSSSGSYFKSHPSFSLMQNSRRFSRKRRHEVISHVGNYCLSQMCTDSVPAMMSGADSVWAIPSVASSSASGIHFTNFASLLTGQHVGGAMVSSETNFNVLATLNAYSGQQPHHRHEGEETNN*

>Glyma18g15421.2   sequence type=predicted peptide   gene model=Glyma18g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEQRVHHDENVTRKPNFPLQLLEKKDEGPPPPPSAAKAKRAPTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLREAEPAVISATGTGTIPANFTSLNVSLRSSGSSQSHYFLNRHNNLHNHNTNNYPFFTTTTPPEFSSSGSYFKSHPSFSLMQNSRRFSRKRRHEVISHVGNYCLSQMCTDSVPAMMSGADSVWAIPSVASSSASGIHFTNFASLLTGQHVGGAMVSSETNFNVLATLNAYSGQQPHHRHEGEETNN*






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