Glyma18g15340 - SoyBase

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Report for Sequence Feature Glyma18g15340

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15439556
stop:	15440809
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF07816	PFAM	Protein of unknown function (DUF1645)	JGI		ISS
UniRef100_I1N162	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N162_SOYBN	SoyBase	E_val: 3.00E-153	ISS
UniRef100_Q84JK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable membrane-associated kinase regulator 6 n=1 Tax=Arabidopsis thaliana RepID=MAKR6_ARATH	SoyBase	E_val: 4.00E-09	ISS

Expression Patterns of Glyma18g15340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15340

Paralog	Evidence	Comments
Glyma08g41090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15340

Limit To All Plant Sequences

>Glyma18g15340.1   sequence type=CDS   gene model=Glyma18g15340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCACACCGCCTCTAGCCACTGATAGCTTCTCATATAGCTGGTTACCAAATTGCAAACCCCTTGCAAATGACCTCAAGGAGCCTCTAAGAGAATCCACTTACAATTCCTGTGAAGGCACCACCAATTATCCATTAATGGAAGAATGGCAAAACTTCAATTTTGATATTTCCATCACACAGTCCCCTGCTGTTCTTTCTCATGCTGATGAACTCTTCTCTAATGGCCTTATCAAACCACTATTTGCTGGCCCTTCCACATTAGAGTCTTGCGATACCACCACAAATTCCACACAATCCAAGCCTATTTCTTCCTTTTCTTCAAGAATTGTTTCTCCAAGAACTGTGCAAATTCATCATGGTTTCCTCACAAAGTGGAAAACTTCTACTTGTAGAACCTTGAGAAACCTTTCTAGGTATGTCAACCAACTATGCCAGAAAGTTGGAAGCTCAAGGAAAAGTACTAAAGTTGATGATATTGATAAAGAAGAGTGGCTAGTTAATAGCAGCTGGAGCAGTTCACAGCAACCGTCTCCAAAATCAAGCACTGTCAATCCTGTTGGTGCTTTGCTTGATCATGAGAACTCAATCTATGAAGCAGTCCTCCACTGCAAAAGATCAATAGAAAGATGA

Predicted protein sequences of Glyma18g15340

Limit To All Plant Sequences

>Glyma18g15340.1   sequence type=predicted peptide   gene model=Glyma18g15340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METTPPLATDSFSYSWLPNCKPLANDLKEPLRESTYNSCEGTTNYPLMEEWQNFNFDISITQSPAVLSHADELFSNGLIKPLFAGPSTLESCDTTTNSTQSKPISSFSSRIVSPRTVQIHHGFLTKWKTSTCRTLRNLSRYVNQLCQKVGSSRKSTKVDDIDKEEWLVNSSWSSSQQPSPKSSTVNPVGALLDHENSIYEAVLHCKRSIER*

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