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Report for Sequence Feature Glyma18g15261

Feature Type:gene_model
Chromosome:Gm18
Start:15343412
stop:15347700
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g15261
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46210AT Annotation by Michelle Graham. TAIR10: Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449 SoyBaseE_val: 0ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016717GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG4232 KOG Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase JGI ISS
PTHR19353Panther FATTY ACID DESATURASE 2 JGI ISS
PF00173PFAM Cytochrome b5-like Heme/Steroid binding domain JGI ISS
PF00487PFAM Fatty acid desaturase JGI ISS
UniRef100_G7LAZ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Delta-8 sphingolipid desaturase n=1 Tax=Medicago truncatula RepID=G7LAZ0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KXS8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXS8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g15261
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15261 not represented in the dataset
Glyma18g15261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15261
ParalogEvidenceComments
Glyma08g41120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15261 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g120400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g15261
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g15261
>Glyma18g15261.1   sequence type=CDS   gene model=Glyma18g15261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGTTTGAAGAGGAAGGTGGTGTAAACCCAATCATCATTGGGTGGAGAAGGCGGACGCGATTACTTGTGGCCGTTGGATTTGATCTTGTGAGAAACCATGAGATACAATATCGATTGTGGAGAGTGGAATTCAAGGAGCTGAAGGAGCACAACAAGTCAGGGGATTTGTGGATTTCAATCCAAGGGAAGGTTTACAATGTTTCAGATTGGGCAAAGGACCACCCTGGTGGAGAGGTTCCCTTGTTGAACCTTGCAGGCCAGGATGTGACTGATGCATTCATAGCATACCATCCAGGCTCAGCATGGAAGTATCTTGATCCCTTCTTCACAGGGTACCACCTGAGGGATTTCAAGGTCTCAGAGGTGTCAAAAGATTACAGAAAGCTTGTGTCTGAGTTTGCCAAAGTGGGCCTTTTTGAGAAGAAGGAACATGTCACTCTTTACACACTGTCCTCTGTTGCTGTCATGTTTTCAATTGTTGTTTATGGTGTCATAGGGTGCAATAGTGTGTGGGCTCATCTGGGTGCTGCCCTCTTGCTGGGCTTGCTTTGGATGCAAAGCACCTATGTGGGTCATGACTCTGGCCACTATGAGGTCATGTCAAGCCCTGGCTACAACAAATTGGCACAAATCCTCTGTGGGAACTGCATGACTGGGATAAGCATTGCTTGGTGGAAGTGGACTCACAATGCTCACCACATCTCCTGCAACAGCCTTGACTATGATCCTGATCTCCAGCACATCCCGGTCTTCGCTGTGTCGACGCGCTTCTTCAACTCAATCAAGTCATGTTTCTATGGAAGGAAATTGGTGTTTGATTCCTTGTCAAGGTTTCTCATCAGTTACCAGCACTGGACATTCTACCCAGTTTTGTGCTTTGCAAGGGTCAATTTGTACCTCCAGACTTTGTTGCTGTTGTTCTCTAGGAGAAAAGTGCCAGATAGAGCCTTCAACATAATGGGGATCCTAGTGTTTTGGATTTGGTTCCCTCTATTGATCTCATCCCTGCCAAATTGGGGAGAAAGGGTCATGTTTGTTTTGGCCAGTTTTGCTGTTTGCTCCATCCAACACCTTCAATTTTGTTTGAACCATTTCGCAGCAGATGTGTATGAGGGCCCACCAAATGGCAATGACTGGTTTGAGAAGCAAACTGGTGGCACATTGGACATCTCTTGCTCTACATGGATGGATTGGTTCTTTGGCGGCTTGCAATTCCAACTTGAGCACCATTTGTTCCCTAGGCTCCCAAGGGCACAATTGAGGAAAATCTCACCTTTGGTGATTGACCTTTGCAAGAAGCACAATTTGCCTTATAGGAGTTTGACATTTGTTGAGGCCAATCTTTGGACTCTTAAGACCCTTAGGACTGCTGCTCTCCAGGCCAGGAATCTCAGTAACCCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTTAACACTCATGGTTGA
Predicted protein sequences of Glyma18g15261
>Glyma18g15261.1   sequence type=predicted peptide   gene model=Glyma18g15261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEFEEEGGVNPIIIGWRRRTRLLVAVGFDLVRNHEIQYRLWRVEFKELKEHNKSGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAYHPGSAWKYLDPFFTGYHLRDFKVSEVSKDYRKLVSEFAKVGLFEKKEHVTLYTLSSVAVMFSIVVYGVIGCNSVWAHLGAALLLGLLWMQSTYVGHDSGHYEVMSSPGYNKLAQILCGNCMTGISIAWWKWTHNAHHISCNSLDYDPDLQHIPVFAVSTRFFNSIKSCFYGRKLVFDSLSRFLISYQHWTFYPVLCFARVNLYLQTLLLLFSRRKVPDRAFNIMGILVFWIWFPLLISSLPNWGERVMFVLASFAVCSIQHLQFCLNHFAADVYEGPPNGNDWFEKQTGGTLDISCSTWMDWFFGGLQFQLEHHLFPRLPRAQLRKISPLVIDLCKKHNLPYRSLTFVEANLWTLKTLRTAALQARNLSNPSSQNLLWEAFNTHG*






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