SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24090 | AT | Annotation by Michelle Graham. TAIR10: chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302 | SoyBase | E_val: 3.00E-126 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009642 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PF00704 | PFAM | Glycosyl hydrolases family 18 | JGI | ISS | |
| UniRef100_I1N156 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N156_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6XD74 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Class III chitinase n=2 Tax=Medicago truncatula RepID=Q6XD74_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma18g15230 not represented in the dataset |
Glyma18g15230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g120200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g15230.1 sequence type=CDS gene model=Glyma18g15230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGAAATCAGCAATCTCAGTCTCATTCTTCTGCTTAGTATTGTCAGCACTAGCAAATGGTTTCAATGCTGGCAAAATTGCAATCTATTGGGGCCAGAATGGCAACGAGGGCACACTGTCCGAGGCTTGTGCCACGGGGAACTATGATTATGTGATCATAGCCTTTTTGCCAACCTTTGGCAATGGCCAAACTCCCATGATTAATCTTGCTGGTCACTGTGATCCATACAGTAAAGGATGCACCGGCTTAAGCTCAGACATCGAGTCCTGCCAAGCCAAAGGCATCAAGGTGTTGCTCTCTTTAGGAGGAGGTGCTGGAAGCTACTCAATTGCATCCACTCAAGATGCAAGCCAAGTAGCCATTTACCTTTGGAACAACTTCTTGGGGGGAAAGTCATCATCTCGCCCTCTTGGCCCCGCCATTCTTGATGGCATTGACTTTGACATTGAAGGTGGATCAAACCAACATTGGGGTGATCTTGCCAAGTTCCTTAAAGGCTATGGGAAGCAAGTGTACATAACTGCGGCACCTCAATGTCCATTTCCTGATGCTTGGATAGGAAATGCCCTCACAACAGGTCTTTTTGACTTTGTTTGGGTCCAATTCTACAACAACCCTCCTTGCCAATACACTTCTGGGGCAATTAGCAACCTTGAAGATGCATGGAAGCAGTGGATATCAGGTATCCCTGCCAACAAGATATTCTTGGGGTTACCAGCTTCACCACAGGCAGCAGGAAGTGGTTTCATTCCTTCTGCTGATCTTATCTCCAATGTGCTTCCAGCCATTAAGGGTTCTTCTAAATATGGAGGTGTTATGCTGTGGTCAAGGTATTATGATGTTCAGAGTGGATATAGCTCCTCCATCAGGAGCCATGTCTAA
>Glyma18g15230.1 sequence type=predicted peptide gene model=Glyma18g15230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALKSAISVSFFCLVLSALANGFNAGKIAIYWGQNGNEGTLSEACATGNYDYVIIAFLPTFGNGQTPMINLAGHCDPYSKGCTGLSSDIESCQAKGIKVLLSLGGGAGSYSIASTQDASQVAIYLWNNFLGGKSSSRPLGPAILDGIDFDIEGGSNQHWGDLAKFLKGYGKQVYITAAPQCPFPDAWIGNALTTGLFDFVWVQFYNNPPCQYTSGAISNLEDAWKQWISGIPANKIFLGLPASPQAAGSGFIPSADLISNVLPAIKGSSKYGGVMLWSRYYDVQSGYSSSIRSHV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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