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Report for Sequence Feature Glyma18g15180

Feature Type:gene_model
Chromosome:Gm18
Start:15186377
stop:15188654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g15180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02950AT Annotation by Michelle Graham. TAIR10: phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439 SoyBaseE_val: 1.00E-39ISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009958GO-bp Annotation by Michelle Graham. GO Biological Process: positive gravitropism SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_G7LA55UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome kinase substrate n=1 Tax=Medicago truncatula RepID=G7LA55_MEDTR SoyBaseE_val: 7.00E-134ISS
UniRef100_UPI000233DFFFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DFFF related cluster n=1 Tax=unknown RepID=UPI000233DFFF SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g15180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15180
ParalogEvidenceComments
Glyma08g41200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g120000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g15180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g15180
>Glyma18g15180.2   sequence type=CDS   gene model=Glyma18g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACTACCATATCATCCTCAACAAGCCGCAACTTCCATCATCAGTTGCATACTTTCAACTCAGAGAACAACATCAACAACAACCTCTTTGATGCCACTTTCTCTCCATATTTGAATGGCAATAATGAAGGGACCATTATTGTAGGAAAGCTTGGTGAACCAAGCCAAAAGCTTAAACCTTTTAAGTCCCCTCTTCAAAAGCTAGAAAAGAAAGAAGAGAATGGAGAAATAGGTGTATTTGGTGCTGAAAAGTACTTCAATGTGGAAGTTGAGACCCCAAGATCTGTCAACTGCATAACCACTCCAAAATACCTTCACCATAGAGATGAACAAATGGCCATAGCAACTAGAAAGAACACACTTCCATATGGAACTCCAAGCATTCGCTCTGAATCAACAACTTGCAACAGCCAACATGCACTACTTCAGAGTGGAATGATGATGAGGAACTCTTCAAGGAGCAAAAAGGAGAACAAGGGTCATCAAGCCAAAAGTGTTCTTGCTGGCCTTGGCTTCAAATGCTCTTGTTCTGATAAAGATTCTGTTGATGCAGGTGAAATCAGTTTCAGCAAACCTGCCACATATGGTTCAGTTCATGGAAAAACTAGAAGAAAGCTTGTGGATATTGCTGCTCTAGATGCTAGCCATTCAATCAAAATAAGCAAGCCTAATGCAGAACTCTTGAAAATCAACAATGTTTACTTCCAAAAGCAAGAGAGTACTTTTGGGAATAGCCAAAAATTACTCTCATTCTCACCCTTGAGTTCTGCCTCAGGAAACCAAAACCATCTTGCCAAAATGCAACAACATCAACAACTAGATGAAGTGGAAGCTGAGAAGCCAAGAAACTCAATAGAGGTGTTTGGCTCCCCAATACTGAAAAACAAGCTCAAGTCATTGAGCTTTGACAGAACCACCACAAGGTTTGTGATGGCCTCATCAAGAGATGGCACTCCTAGACTATTGGAGGAAATTGACTCAAACTACATCAATGATGCTGCAAGTGATGCAAGTTCAGACTTGTTTGAGATTGAGAGCATCAAAAGCAAAACCAATCCTTTCCATGCAAGGCAAACATCAGATGTTGCTGCTTCAAGCTGTGTGAGCCCCACAAATGGCTATGCACCAAGTGAGGCAAGCATAGAGTGGAGTGTGGCCACTGCCAGTGCTGCAGTGATGTCAGATTGTGAAGAACAGATGTCTGAGGTAACCATAAGAAGTCCAATAAGAACAACAACATTTGCTAATGGAAAAGCAAAATCCACCAAAGAGGTTCAGAGAATTAGGCGCCCTAGCATGCTGTTGGGTTGCAAGAGCCACAAATCTGTTAGAGTTGCAGGTGATGCTTACATAACATATGAGAATCCAAGTTCCACACCAAAACTTCGTAACAGGACTAATAGTTCCTCGATGGTGGCAAGGTTTCCTTCAGAGACAAAACTGGGAAATTTTGGTGCAAAACATGGACATCATCATGCTTATGCCACACCATCACCACTGCAGAACTCTCACTCATCACCACATGCCTCAAAACTTCTATACATTTAG
Predicted protein sequences of Glyma18g15180
>Glyma18g15180.2   sequence type=predicted peptide   gene model=Glyma18g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTTISSSTSRNFHHQLHTFNSENNINNNLFDATFSPYLNGNNEGTIIVGKLGEPSQKLKPFKSPLQKLEKKEENGEIGVFGAEKYFNVEVETPRSVNCITTPKYLHHRDEQMAIATRKNTLPYGTPSIRSESTTCNSQHALLQSGMMMRNSSRSKKENKGHQAKSVLAGLGFKCSCSDKDSVDAGEISFSKPATYGSVHGKTRRKLVDIAALDASHSIKISKPNAELLKINNVYFQKQESTFGNSQKLLSFSPLSSASGNQNHLAKMQQHQQLDEVEAEKPRNSIEVFGSPILKNKLKSLSFDRTTTRFVMASSRDGTPRLLEEIDSNYINDAASDASSDLFEIESIKSKTNPFHARQTSDVAASSCVSPTNGYAPSEASIEWSVATASAAVMSDCEEQMSEVTIRSPIRTTTFANGKAKSTKEVQRIRRPSMLLGCKSHKSVRVAGDAYITYENPSSTPKLRNRTNSSSMVARFPSETKLGNFGAKHGHHHAYATPSPLQNSHSSPHASKLLYI*






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