Glyma18g15150 - SoyBase

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Report for Sequence Feature Glyma18g15150

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15170217
stop:	15175476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10940	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:3656050-3658170 REVERSE LENGTH=363	SoyBase	E_val: 4.00E-43	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0080022	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0070300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidic acid binding	SoyBase	N/A	ISS
PTHR24343	Panther	SERINE/THREONINE KINASE	JGI		ISS
PTHR24343:SF58	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7LGB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase SAPK3 n=1 Tax=Medicago truncatula RepID=G7LGB9_MEDTR	SoyBase	E_val: 4.00E-41	ISS
UniRef100_I1N154	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N154_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g15150 not represented in the dataset	Glyma18g15150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g15150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g15150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15150

Limit To All Plant Sequences

>Glyma18g15150.1   sequence type=CDS   gene model=Glyma18g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAGACTCATCGAGCGCGTCAGGGCCAAGAGGAACAACATCGGACGGAGGCAGAAAAATTGAAAAGGATATACAAAGACGGTCATTAGTAAAACCCGTCGTTGTCTTAGTTTCATGTAATTACAATATTGCCACCGAAGAACATTCTAAGACGGTTGTTTACAACCGCCTTAGAATGTGCGACGTTAAATACAAAAAAAATGTAAGAGAAATCATTAATCACAGGTCTTTAAGACATCCTAACATTATCAGGTTTAAAAAGGTTGAATATGCATCTGGTGGAGAACTATTTGAGAAAACCTGCAATTGGGGGCATTTTAATGAGGATGAGGTCCTTATTTCCTGTGTAACTATTAACCCATTGTTATGCCACATGCTCGTTTCTTCCTTCAACAACTCATATTGGGGTCAGCTATTGTCATGCAATGAATATAGTATAGGCAATGTGTCAATCTTGAGTATTATGTATGATGTGATGTATGAGTCTTATGACCTGAAGTTGGAAAACAATTTGTTGGATGGAAGACCAGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTTTGTGCTTGATCCATTCATTAAAATTGGGTTTATCCCAAGTCTAAGTAATAGAGTGCTAGACCAGAATGTAGGCTTGAATTCTGAAATGCTCAGGATTTGGAAAGTGTATGTTTGTAAGAAGAGGATTAGGAGAATGATAAATGTCTGGTCATGTGGAGTAACCTTATTTGTGATGCTAATGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCAGAAGACAATTCAACATCTGGTTGCAGGGTTCTCAATGTCATATAAATCAGATTGTGCATGTAGGCAATTAATAAAAAGGCATTGTAAGACAATTCTCCAAAAAATTATCTTAGAAAGTCTACTTTCTAAGATGGTTTTAGAGAAAACCGTCTTAGAATCCACAATTTTTTTAAAAAAAGATATTATAAAACAGTTTTTTAGAAAGCTATTTTAA

Predicted protein sequences of Glyma18g15150

Limit To All Plant Sequences

>Glyma18g15150.1   sequence type=predicted peptide   gene model=Glyma18g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEADSSSASGPRGTTSDGGRKIEKDIQRRSLVKPVVVLVSCNYNIATEEHSKTVVYNRLRMCDVKYKKNVREIINHRSLRHPNIIRFKKVEYASGGELFEKTCNWGHFNEDEVLISCVTINPLLCHMLVSSFNNSYWGQLLSCNEYSIGNVSILSIMYDVMYESYDLKLENNLLDGRPALHLKICDFGYSKFVLDPFIKIGFIPSLSNRVLDQNVGLNSEMLRIWKVYVCKKRIRRMINVWSCGVTLFVMLMGSYPFEDPNDPKDFQKTIQHLVAGFSMSYKSDCACRQLIKRHCKTILQKIILESLLSKMVLEKTVLESTIFLKKDIIKQFFRKLF*

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