Glyma18g15080 - SoyBase

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Report for Sequence Feature Glyma18g15080

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15119653
stop:	15124783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26850	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:9301146-9303432 REVERSE LENGTH=616	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF37	Panther	UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFER	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_D7KPN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dehydration-responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KPN7_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1N152	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N152_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15080

Paralog	Evidence	Comments
Glyma08g41220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g119600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g15080

Limit To All Plant Sequences

>Glyma18g15080.3   sequence type=transcript   gene model=Glyma18g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTTTCCTCGTATTCCATATTTCAGAAAGTAGTATATATGCTTTATATCATCATTGCTAGCTAGCTGGTAAATTTTATTGACTCTCTCTCTCTCTATTCTCAGTGTAGCATACATCATTGTTTGGTGCTCAGAAAATAAAAAAACATTTGTCAACTTTTTTTTCTCTTTCTTTAACTCCTCTCTTTTGGGGAATCCCCGATCTCCAAACCAGTGTTCACCCAACCTTCATATGGTTCTAAATGGCAAAACCAAGTTCAGCTGATGGTAGGACTAGAAGTTCTGTGCAGATCTTTATAGTAGTTGGTCTATGCTGTTTCTTCTATATATTAGGCGCATGGCAGAGAAGTGGTTTCGGAAAGGGAGATAGCATAGCATTGGAGATTACTAAGACTAAAGCAGAATGTAATATAGTTCCAAATTTAAGTTTTGATTCCCACCATGGTGGAGAAGTTAGCGAAATTGATGAAGCTGATTCAAAGCCTAAGGTATTTGAACCATGTGCTGCTCGCTATACCGATTACACTCCCTGTCAAGATCAAAAGCGTGCCATGACCTTTCCTAGAGAAAACATGGTCTATAGAGAGAGACACTGTCCCCCAGAGGAAGAGAAGTTACGCTGTATGATCCCTGCACCCAAGGGGTATGTAACACCATTTCCATGGCCGAAGAGCCGTGATTATGTTCCATATGCTAATGCTCCCTACAAGAGCCTTACAGTTGAGAAGGCTATTCAGAATTGGATACAATACGAGGGAAATGTGTTCAAATTCCCTGGTGGCGGAACCCAATTTCCTCAAGGTGCTGATAAATATATTGATCAAATTGCATCTGTGATACCTATAACTAATGGAACAGTGAGGACAGCACTTGACACTGGTTGTGGGGTTGCCAGTTGGGGTGCATATCTTTGGAGCAGAAATGTTGTTGCCATGTCATTTGCACCAAGGGACAATCATGAAGCACAAGTACAGTTTGCTCTTGAAAGGGGTGTCCCTGCTATTATTGGTGTTTTGGGGTCCATAAAGTTGCCTTATCCTTCTAGAGCCTTTGATATGGCTCATTGTTCTCGCTGTTTGATTCCTTGGGGAGCAAATAATGGAATTTATATGATGGAAGTTGATCGAGTTCTAAGGCCTGGTGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGCTAACTACAAATCCTGGCTGAGACCTAAGGAAGAACTTGAGGAAGAGCAAAGAAAGATTGAAGAGATTGCTAAGCAACTTTGCTGGGAGAAGAGGTCGGAGAAGGCTGAAATGGCCATTTGGCAAAAGGTTGTAGACTCTGAATCATGTCGAAGGAGACAAGATGATTCTAGTGTAGAATTTTGCCAGTCCTCGGATGCCGATGATGTCTGGTATAAGAAAATGGAGACCTGCATTACTCCCACTCCTAAAGTTACTGGTGGGAATCTTAAACCATTTCCAAGCAGGCTATATGCCATTCCTCCCAGAATTGCTAGTGGCTCAGTTCCAGGAGTTTCCTCTGAGACATATCAGGATGATAACAAAAAGTGGAAAAAACACGTAAATGCTTACAAGAAAACTAATAGACTGTTGGACTCGGGAAGGTATCGCAACATTATGGATATGAATTCTGGATTGGGTAGTTTTGCTGCAGCTATTCATTCTTCAAATCTATGGGTCATGAATGTTGTGCCTACTATAGCTGAGATGAATACACTGGGTGTGATATATGAGCGAGGACTGATTGGCATCTATCATGATTGGTGTGAAGCCTTTTCAACATATCCAAGGACTTATGACCTCATTCATGCCCATGGAGTCTTTAGTCTGTACAAGGATAAATGCAATGCAGAAGATATTCTTCTGGAGATGGACCGGATTTTGCGACCGGAAGGTGCTGTCATATTCCGCGATGAAGTTGATGTGCTAATTAAGGTAAAGAAAATAGTTGGAGGAATGAGATGGGACACTAAAATGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTGCTGGTTGCTGTCAAGCAGTATTGGGTTACTAATTCCACATCAACTCAATAATCAACTAAATCAAAGTTGAAGAACTGGCTTGGCTTTTGGCTGCCAAGTACATTTCTCTATACGATCTTCACAGAATTTCACATGGTATTTTGGCTCAATTAGTCATTGCAATTTGCAACCGTGGCACAAAGGGGTTTGGTTAAAGGAGTTTTGCACAATTGTCACTTACCTAAGGTTTCCTATGTTAATTTATTGATGAAGAAAGCTACAAAGCTATTATGCTTAAGGTTTATGCCTCTTGGCATTTTTTGGTCTAACTTAGTTATCTTGTACAATGTTACATTCAAAAGCAAACCCTGTCTCTCTATCTCTTCCCTTTATTTTTTAGTTATATTCCTTATTTAAAAGGTTTAATTTGTACCAAAAAAAAAATCTTTTTATTTTTTAATTGAGTTGTAGCCTCTATTGGCCCAATATATTTAGGATACCTTTTCACTTTGCAACTAGCACATTGTTATTAAAAGAATTGTGGTTAGAATTAATTTGGCCACATATTTTATTTAACGTAAGGA

Coding sequences of Glyma18g15080

Limit To All Plant Sequences

>Glyma18g15080.2   sequence type=CDS   gene model=Glyma18g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAACCAAGTTCAGCTGATGGTAGGACTAGAAGTTCTGTGCAGATCTTTATAGTAGTTGGTCTATGCTGTTTCTTCTATATATTAGGCGCATGGCAGAGAAGTGGTTTCGGAAAGGGAGATAGCATAGCATTGGAGATTACTAAGACTAAAGCAGAATGTAATATAGTTCCAAATTTAAGTTTTGATTCCCACCATGGTGGAGAAGTTAGCGAAATTGATGAAGCTGATTCAAAGCCTAAGGTATTTGAACCATGTGCTGCTCGCTATACCGATTACACTCCCTGTCAAGATCAAAAGCGTGCCATGACCTTTCCTAGAGAAAACATGGTCTATAGAGAGAGACACTGTCCCCCAGAGGAAGAGAAGTTACGCTGTATGATCCCTGCACCCAAGGGGTATGTAACACCATTTCCATGGCCGAAGAGCCGTGATTATGTTCCATATGCTAATGCTCCCTACAAGAGCCTTACAGTTGAGAAGGCTATTCAGAATTGGATACAATACGAGGGAAATGTGTTCAAATTCCCTGGTGGCGGAACCCAATTTCCTCAAGGTGCTGATAAATATATTGATCAAATTGCATCTGTGATACCTATAACTAATGGAACAGTGAGGACAGCACTTGACACTGGTTGTGGGGTTGCCAGTTGGGGTGCATATCTTTGGAGCAGAAATGTTGTTGCCATGTCATTTGCACCAAGGGACAATCATGAAGCACAAGTACAGTTTGCTCTTGAAAGGGGTGTCCCTGCTATTATTGGTGTTTTGGGGTCCATAAAGTTGCCTTATCCTTCTAGAGCCTTTGATATGGCTCATTGTTCTCGCTGTTTGATTCCTTGGGGAGCAAATAATGGAATTTATATGATGGAAGTTGATCGAGTTCTAAGGCCTGGTGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGCTAACTACAAATCCTGGCTGAGACCTAAGGAAGAACTTGAGGAAGAGCAAAGAAAGATTGAAGAGATTGCTAAGCAACTTTGCTGGGAGAAGAGGTCGGAGAAGGCTGAAATGGCCATTTGGCAAAAGGTTGTAGACTCTGAATCATGTCGAAGGAGACAAGATGATTCTAGTGTAGAATTTTGCCAGTCCTCGGATGCCGATGATGTCTGGTATAAGAAAATGGAGACCTGCATTACTCCCACTCCTAAAGTTACTGGTGGGAATCTTAAACCATTTCCAAGCAGGCTATATGCCATTCCTCCCAGAATTGCTAGTGGCTCAGTTCCAGGAGTTTCCTCTGAGACATATCAGGATGATAACAAAAAGTGGAAAAAACACGTAAATGCTTACAAGAAAACTAATAGACTGTTGGACTCGGGAAGGTATCGCAACATTATGGATATGAATTCTGGATTGGGTAGTTTTGCTGCAGCTATTCATTCTTCAAATCTATGGGTCATGAATGTTGTGCCTACTATAGCTGAGATGAATACACTGGGTGTGATATATGAGCGAGGACTGATTGGCATCTATCATGATTGGTGTGAAGCCTTTTCAACATATCCAAGGACTTATGACCTCATTCATGCCCATGGAGTCTTTAGTCTGTACAAGGATAAATGCAATGCAGAAGATATTCTTCTGGAGATGGACCGGATTTTGCGACCGGAAGGTGCTGTCATATTCCGCGATGAAGTTGATGTGCTAATTAAGGTAAAGAAAATAGTTGGAGGAATGAGATGGGACACTAAAATGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTGCTGGTTGCTGTCAAGCAGTATTGGGTTACTAATTCCACATCAACTCAATAA

>Glyma18g15080.3   sequence type=CDS   gene model=Glyma18g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAACCAAGTTCAGCTGATGGTAGGACTAGAAGTTCTGTGCAGATCTTTATAGTAGTTGGTCTATGCTGTTTCTTCTATATATTAGGCGCATGGCAGAGAAGTGGTTTCGGAAAGGGAGATAGCATAGCATTGGAGATTACTAAGACTAAAGCAGAATGTAATATAGTTCCAAATTTAAGTTTTGATTCCCACCATGGTGGAGAAGTTAGCGAAATTGATGAAGCTGATTCAAAGCCTAAGGTATTTGAACCATGTGCTGCTCGCTATACCGATTACACTCCCTGTCAAGATCAAAAGCGTGCCATGACCTTTCCTAGAGAAAACATGGTCTATAGAGAGAGACACTGTCCCCCAGAGGAAGAGAAGTTACGCTGTATGATCCCTGCACCCAAGGGGTATGTAACACCATTTCCATGGCCGAAGAGCCGTGATTATGTTCCATATGCTAATGCTCCCTACAAGAGCCTTACAGTTGAGAAGGCTATTCAGAATTGGATACAATACGAGGGAAATGTGTTCAAATTCCCTGGTGGCGGAACCCAATTTCCTCAAGGTGCTGATAAATATATTGATCAAATTGCATCTGTGATACCTATAACTAATGGAACAGTGAGGACAGCACTTGACACTGGTTGTGGGGTTGCCAGTTGGGGTGCATATCTTTGGAGCAGAAATGTTGTTGCCATGTCATTTGCACCAAGGGACAATCATGAAGCACAAGTACAGTTTGCTCTTGAAAGGGGTGTCCCTGCTATTATTGGTGTTTTGGGGTCCATAAAGTTGCCTTATCCTTCTAGAGCCTTTGATATGGCTCATTGTTCTCGCTGTTTGATTCCTTGGGGAGCAAATAATGGAATTTATATGATGGAAGTTGATCGAGTTCTAAGGCCTGGTGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGCTAACTACAAATCCTGGCTGAGACCTAAGGAAGAACTTGAGGAAGAGCAAAGAAAGATTGAAGAGATTGCTAAGCAACTTTGCTGGGAGAAGAGGTCGGAGAAGGCTGAAATGGCCATTTGGCAAAAGGTTGTAGACTCTGAATCATGTCGAAGGAGACAAGATGATTCTAGTGTAGAATTTTGCCAGTCCTCGGATGCCGATGATGTCTGGTATAAGAAAATGGAGACCTGCATTACTCCCACTCCTAAAGTTACTGGTGGGAATCTTAAACCATTTCCAAGCAGGCTATATGCCATTCCTCCCAGAATTGCTAGTGGCTCAGTTCCAGGAGTTTCCTCTGAGACATATCAGGATGATAACAAAAAGTGGAAAAAACACGTAAATGCTTACAAGAAAACTAATAGACTGTTGGACTCGGGAAGGTATCGCAACATTATGGATATGAATTCTGGATTGGGTAGTTTTGCTGCAGCTATTCATTCTTCAAATCTATGGGTCATGAATGTTGTGCCTACTATAGCTGAGATGAATACACTGGGTGTGATATATGAGCGAGGACTGATTGGCATCTATCATGATTGGTGTGAAGCCTTTTCAACATATCCAAGGACTTATGACCTCATTCATGCCCATGGAGTCTTTAGTCTGTACAAGGATAAATGCAATGCAGAAGATATTCTTCTGGAGATGGACCGGATTTTGCGACCGGAAGGTGCTGTCATATTCCGCGATGAAGTTGATGTGCTAATTAAGGTAAAGAAAATAGTTGGAGGAATGAGATGGGACACTAAAATGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTGCTGGTTGCTGTCAAGCAGTATTGGGTTACTAATTCCACATCAACTCAATAA

Predicted protein sequences of Glyma18g15080

Limit To All Plant Sequences

>Glyma18g15080.2   sequence type=predicted peptide   gene model=Glyma18g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPSSADGRTRSSVQIFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKTKAECNIVPNLSFDSHHGGEVSEIDEADSKPKVFEPCAARYTDYTPCQDQKRAMTFPRENMVYRERHCPPEEEKLRCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYLWSRNVVAMSFAPRDNHEAQVQFALERGVPAIIGVLGSIKLPYPSRAFDMAHCSRCLIPWGANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEEIAKQLCWEKRSEKAEMAIWQKVVDSESCRRRQDDSSVEFCQSSDADDVWYKKMETCITPTPKVTGGNLKPFPSRLYAIPPRIASGSVPGVSSETYQDDNKKWKKHVNAYKKTNRLLDSGRYRNIMDMNSGLGSFAAAIHSSNLWVMNVVPTIAEMNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGVFSLYKDKCNAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHEDGPLVPEKVLVAVKQYWVTNSTSTQ*

>Glyma18g15080.3   sequence type=predicted peptide   gene model=Glyma18g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPSSADGRTRSSVQIFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKTKAECNIVPNLSFDSHHGGEVSEIDEADSKPKVFEPCAARYTDYTPCQDQKRAMTFPRENMVYRERHCPPEEEKLRCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFKFPGGGTQFPQGADKYIDQIASVIPITNGTVRTALDTGCGVASWGAYLWSRNVVAMSFAPRDNHEAQVQFALERGVPAIIGVLGSIKLPYPSRAFDMAHCSRCLIPWGANNGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEEIAKQLCWEKRSEKAEMAIWQKVVDSESCRRRQDDSSVEFCQSSDADDVWYKKMETCITPTPKVTGGNLKPFPSRLYAIPPRIASGSVPGVSSETYQDDNKKWKKHVNAYKKTNRLLDSGRYRNIMDMNSGLGSFAAAIHSSNLWVMNVVPTIAEMNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGVFSLYKDKCNAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHEDGPLVPEKVLVAVKQYWVTNSTSTQ*

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