Glyma18g15050 - SoyBase

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Report for Sequence Feature Glyma18g15050

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15079175
stop:	15082211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05410	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) \| chr1:1585504-1587268 REVERSE LENGTH=471	SoyBase	E_val: 1.00E-121	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07227	PFAM	Protein of unknown function (DUF1423)	JGI		ISS
UniRef100_G7K3N6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin protein kinase n=1 Tax=Medicago truncatula RepID=G7K3N6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N151	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N151_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g15050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g119500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g15050

Limit To All Plant Sequences

>Glyma18g15050.1   sequence type=CDS   gene model=Glyma18g15050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGGAGATGGAGATGGAGATGGAGGAGAATAATGGATTATTGAATTTACAGGCAGTGGCACCGGAAATGTCCGGCGAGGGATTTCCATATGCGCCGGAAAATTGGCCGGAAGAGGGTGACATTTGGGGATGGAGAACTGGGCGGAGAATTGTCGCAAATCGTTCCCGCTTTCAGGATCGGTATCTGTATCTGCCAAATCGACTAATCCGTGCCTTGAAAGAGGAGAAGGAGAAGGAGAACCCAGGGTCAGGGGCTGACTCAGGCCCAAGTTCAAGCTCAATCCGAAGGCAACAGCACATCTTTGCTAGCAAGCTTGCTGTTGAACGCTACATCAAGACACATTTTCCTGATGCGGATATTGATGCCTTTTTTGCTTCCTTCTCCTGGAAGATTCCCGCTCTACGATCCAATGGCAATGCAGTTCCTGTAGCTGCTGTACCTCTTCAACAGATAGCACAAGAAGCATATGACTCCGACTCTGAGGGCGTTGTCAAGTGTAAAGCAAGAAATAAGAAGTGCACAAGTCTGGTGTTAGAAGAAATAGAAAAATATTCACCGGCCATGCCTTGTGATATCTGCTGTTCTGAACCTGGGTTTTGCCGTGATTGTTGTTGCATTCTTTGTTGCAAAACTGTTTCTTCAGCTTATGGTGGCTATAATTATATCAAGTGCCAAGTGAACGTAGGTGGGGGCATCTGTGGCCATGTTGCTCATATGGAATGTGCTCTTCGATGTCTATTGGCTGGCAAAGTTGGAGGAAGTATTGGGCTAGATGCCCAGTACCACTGCCGACGCTGTGATGGGAGGACTGATATGATTTCGCATGTTAATAATCTTATACAAACATGTAGAGCTGCTGATTTGGATGCTGAAATTCGGAAGAAGATTTTGAATCTTGGTGCTTGTCTCTTGCGTGGTTCACAGAAACCTGTTGCAAAGGAGCTGCTGTGTCGTATTGAATTGGCCATCTCAAAGCTTAAATGTGGAACTAATCTTGAAGATATCTGGAAGGAGGATTACAGTTTTGTAGCTCATTCTGCAGATAACGGCAATGATGTGATGGAAGTTATGGTCTATGATGACCCTTTTGAAGTTAGGACAGGGTTGGAATCTTATGATTTTCTACCTCGTTCATTAAAACTTGAGTCTGAAGTTGATCAGGTTCTCCAGGCTCTTAGAAAGTCACAGGAGCTTGAATATAAGGTGGCAGAAGAAACACTTCAAGACCAAAAGACTTACTTAAAAAGATTGTATCAGCAACTGGACCGTGAGAAGTATGAATTGGCTTGTCAAAACTCATCTACCTCAGATGTCTCGTCTAGTGCTGTAAGAGAAAGAAAGAAACAGATAAGACGGGAGGTGGCAAAATTTGAAATCATGAAAAAAGTTGCCAATGGTTTTGGCAGGACATCCAATGATATTGTAAAGGAACACTTTGGCTTGAAAGTGATAGACTGA

Predicted protein sequences of Glyma18g15050

Limit To All Plant Sequences

>Glyma18g15050.1   sequence type=predicted peptide   gene model=Glyma18g15050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMEMEMEMEENNGLLNLQAVAPEMSGEGFPYAPENWPEEGDIWGWRTGRRIVANRSRFQDRYLYLPNRLIRALKEEKEKENPGSGADSGPSSSSIRRQQHIFASKLAVERYIKTHFPDADIDAFFASFSWKIPALRSNGNAVPVAAVPLQQIAQEAYDSDSEGVVKCKARNKKCTSLVLEEIEKYSPAMPCDICCSEPGFCRDCCCILCCKTVSSAYGGYNYIKCQVNVGGGICGHVAHMECALRCLLAGKVGGSIGLDAQYHCRRCDGRTDMISHVNNLIQTCRAADLDAEIRKKILNLGACLLRGSQKPVAKELLCRIELAISKLKCGTNLEDIWKEDYSFVAHSADNGNDVMEVMVYDDPFEVRTGLESYDFLPRSLKLESEVDQVLQALRKSQELEYKVAEETLQDQKTYLKRLYQQLDREKYELACQNSSTSDVSSSAVRERKKQIRREVAKFEIMKKVANGFGRTSNDIVKEHFGLKVID*

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