Glyma18g15030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g15030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	15035339
stop:	15041767
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g15030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14270	AT	Annotation by Michelle Graham. TAIR10: CAAX amino terminal protease family protein \| chr1:4875099-4877195 REVERSE LENGTH=353	SoyBase	E_val: 2.00E-142	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF02517	PFAM	CAAX amino terminal protease family	JGI		ISS
UniRef100_B9S8V7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prenyl-dependent CAAX protease, putative n=1 Tax=Ricinus communis RepID=B9S8V7_RICCO	SoyBase	E_val: 3.00E-151	ISS
UniRef100_UPI000233DFFB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFFB related cluster n=1 Tax=unknown RepID=UPI000233DFFB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g15030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g15030

Paralog	Evidence	Comments
Glyma08g41230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g15030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g119400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g15030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g15030

Limit To All Plant Sequences

>Glyma18g15030.2   sequence type=transcript   gene model=Glyma18g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATTCCATCCAACATTTTTTCAAGTACTTCAACTTCAAGACTCCAAGTTCAACACTTCAACTAATAAAGCCGAAGTGTTGTGACACTGACGAGCCTTATCTCCTGGCTACTCTGCCTCCTGCTCGAGTGCACATCATCAAAAGGACTAAAAAAACTCAAAGTACTTCTTTTGCAAACACTATTCCAAGTTCCAAACTCTCCACCTCTCATAATGGTTTTAAATTTAATGTTTATTGCTTCTTCTCTGCATTCACCATCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTGGTCTTCGTTCAAAACCATTTCAAAGCAAAGCCACGCATTTCTCCATAGAAACCCGTCTCTCCAGCGCCACTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAACACTGAAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGGAATGGCAAACAGTTTCATTGACCTCTCTTGCCTGTGGATTCGGTTTTGTGTTGGCAGGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTCTTACTTGATCAGAGCATCACTACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAACCACTTCCTGAAGACTTCTTCAAATATGATTTGAGGGAGCCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAGTTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTATTTCGAGGATTTTTTATGACTTCCCTCACTAAGTGATATTCATCGACTAGATAATTGAACAGAGAAGGTTTCAACAAGTGCAGCTTCAGCTATGTTGTGGTTAGCTTATCCTTGAACGAAGTAGAAGTTGATTAGGATGCATAGTGAACTAGTGAAGTTTGCATTGTGGTAGGTAGTTGTTATTTTTCCTTCCAGTTAAGTTTCCGTCCAGATTGGTGTCTTAGGACTCATAATTTAGGTGGTAGTTCTTCAATCAATTTGGTGAGCTTTAATATATGAAAGTTTAGAGATTTTATATAGCATATACATTGGGAACTGGGGATGGTTGGTCTT

Coding sequences of Glyma18g15030

Limit To All Plant Sequences

>Glyma18g15030.1   sequence type=CDS   gene model=Glyma18g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTAAATTTAATGTTTATTGCTTCTTCTCTGCATTCACCATCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTGGTCTTCGTTCAAAACCATTTCAAAGCAAAGCCACGCATTTCTCCATAGAAACCCGTCTCTCCAGCGCCACTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAACACTGAAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGGAATGGCAAACAGTTTCATTGACCTCTCTTGCCTGTGGATTCGGTTTTGTGTTGGCAGGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTCTTACTTGATCAGAGCATCACTACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAACCACTTCCTGAAGACTTCTTCAAATATGATTTGAGGGAGCCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAGTTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTATTTCGAGGATTTTTTATGACTTCCCTCACTAAGTGGGTTCCTACGCCAGTTGCTGTTGTCATTAGTGCTGCTTTGTTTGCCCTTGCACATCTCACTCCTGGAGAATTCCCCCAGTTGTTTGTTCTAGGGACTGCTTTGGGGTTTTCATATGCTCAAACTCACAACCTTCTCACTCCCATCACTATCCATTCTTTTTGGAATTCAGGAGTTATATTACTTCTTACTTTTCTGCAGCTTCAAGGGTACGATATCAGAGAATTGTTGCAGGCAACTTGA

>Glyma18g15030.2   sequence type=CDS   gene model=Glyma18g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTAAATTTAATGTTTATTGCTTCTTCTCTGCATTCACCATCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTGGTCTTCGTTCAAAACCATTTCAAAGCAAAGCCACGCATTTCTCCATAGAAACCCGTCTCTCCAGCGCCACTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAACACTGAAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGGAATGGCAAACAGTTTCATTGACCTCTCTTGCCTGTGGATTCGGTTTTGTGTTGGCAGGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTCTTACTTGATCAGAGCATCACTACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAACCACTTCCTGAAGACTTCTTCAAATATGATTTGAGGGAGCCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAGTTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTATTTCGAGGATTTTTTATGACTTCCCTCACTAAGTGA

Predicted protein sequences of Glyma18g15030

Limit To All Plant Sequences

>Glyma18g15030.1   sequence type=predicted peptide   gene model=Glyma18g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLNLMFIASSLHSPSPCTLFSSHKLCWSSFKTISKQSHAFLHRNPSLQRHLSLGSKRVLPSVCFFNTEDKSDSKESGWPILRRWEVPWEWQTVSLTSLACGFGFVLAGLTEAIALPYLGIKPDVLSLDDKAEILLLDQSITTAVVLGIIYSVANTFQPLPEDFFKYDLREPFNLQKGWLLWAGVGLAGAILAISLTGVAVSFFNGETPQRETDALVRLLPLIGSSNLSTACLVGITGVLAPLLEETVFRGFFMTSLTKWVPTPVAVVISAALFALAHLTPGEFPQLFVLGTALGFSYAQTHNLLTPITIHSFWNSGVILLLTFLQLQGYDIRELLQAT*

>Glyma18g15030.2   sequence type=predicted peptide   gene model=Glyma18g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLNLMFIASSLHSPSPCTLFSSHKLCWSSFKTISKQSHAFLHRNPSLQRHLSLGSKRVLPSVCFFNTEDKSDSKESGWPILRRWEVPWEWQTVSLTSLACGFGFVLAGLTEAIALPYLGIKPDVLSLDDKAEILLLDQSITTAVVLGIIYSVANTFQPLPEDFFKYDLREPFNLQKGWLLWAGVGLAGAILAISLTGVAVSFFNGETPQRETDALVRLLPLIGSSNLSTACLVGITGVLAPLLEETVFRGFFMTSLTK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain