SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| PF02721 | PFAM | Domain of unknown function DUF223 | JGI | ISS | |
| PF08646 | PFAM | Replication factor-A C terminal domain | JGI | ISS | |
| UniRef100_G7J1G0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Replication factor-a protein 1 (Rpa1) family protein n=1 Tax=Medicago truncatula RepID=G7J1G0_MEDTR | SoyBase | E_val: 1.00E-46 | ISS |
| UniRef100_I1KWL6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWL6_SOYBN | SoyBase | E_val: 3.00E-152 | ISS |
|
Glyma18g14961 not represented in the dataset |
Glyma18g14961 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g118900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g14961.1 sequence type=CDS gene model=Glyma18g14961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATTACTTATTATTCAGCCCATTGAAAATTGTACTTATGTCATGCACAATTTTAAAGTGCTAAAAAACAACGGTCAATACAGAGTCTGTGATCACCAATTTAAATTGGTGTTTATTGAAGTTACTGTTGTAAGGCAGTGTGCTCTAGACGACCTCCCTTTTAGAAAATACAGGTTTGCTGAATTTGGTGATGTTGTGGCTAGGCAGTTTGAACTTGGCCTATTGACGTTATCGGTGTTGTGGACGAGGTTGTCTTTCGTCATGTTTCAGGAAAAGCAATTGCTATCTTGCACTTTGTGGGATGATTATTGCTTGCAATTTTTAAAGTTCTTAGATGATCATGAAGGTCATGGCCCGATTACAGTTTTATTGACCCATGGTAGAATAAAGGAAGCTCAGGGATCTTATCCACCATCGGTCAACAATTCTTTCAAGGCTTCGAAGTTAATTATTAACCAATCGGTGATGGAGATTCAAGAATTCAATGAACGATATTTTTTCCATGTGGTGTCTAATATGTGCTTGCAGAGTTGGGCATTGAGGCCCGGTTCTATCCAATTATCATCAAAGGAATCATTCTTTGGAAAGGCTGAGGCAAAGACTATTGTTGAGATTAACACCATCCCTGAAGAAATTGTTTGTGTAACTATTGGCACAATTACTAGGATTGTTATGGACAATCATTCATGGTGTTATATAGCTTGCATTCAGTGCCATAAAAAAATTGATGCAGAGATGATGCCCTTCACATGTGCATGTGGCAAATACAATCAGGAAGCTATGCTTAGGTATAGGCTTGACGTGATGATCAACCACAGAGATGAAAACACAAAATTCTTGCTTTGGGATCGTGAATGCACTGAATTAATTGGTCAGTCAGCTGATGCAATTAATAGGCTTAAAATTGAAGTACATATTTGGATTCAAAAGCAACTTTTTTCCTTTGATATGTTATTTTTTATAAAGGTGCAACCCAAGTTCAGGAATTCTGCCATTTTGAAGTGTTCTATTGACTCAAGCTTAATTGATGTTGTGATGGACATGCTACCTGATGCTGAGACATCTTCAAAAATCAATGTCCCAGCCTTTGATTCCAATCATTCTACCAAACATGAATCTAAATCCATGTCTGTGACTATAGACCATGATCCACTGCTTGGGCTCCCATTGACACCTACAAAGCGACAGACATTTCATGATTGTGATGATGAAGCAACGAGCTCTCTAATTTCACCTGCACAGCTTTCATCTAACAAATTAAAAAAACATGACTCAATTTAG
>Glyma18g14961.1 sequence type=predicted peptide gene model=Glyma18g14961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LLLIIQPIENCTYVMHNFKVLKNNGQYRVCDHQFKLVFIEVTVVRQCALDDLPFRKYRFAEFGDVVARQFELGLLTLSVLWTRLSFVMFQEKQLLSCTLWDDYCLQFLKFLDDHEGHGPITVLLTHGRIKEAQGSYPPSVNNSFKASKLIINQSVMEIQEFNERYFFHVVSNMCLQSWALRPGSIQLSSKESFFGKAEAKTIVEINTIPEEIVCVTIGTITRIVMDNHSWCYIACIQCHKKIDAEMMPFTCACGKYNQEAMLRYRLDVMINHRDENTKFLLWDRECTELIGQSADAINRLKIEVHIWIQKQLFSFDMLFFIKVQPKFRNSAILKCSIDSSLIDVVMDMLPDAETSSKINVPAFDSNHSTKHESKSMSVTIDHDPLLGLPLTPTKRQTFHDCDDEATSSLISPAQLSSNKLKKHDSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
