Glyma18g14910 - SoyBase

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Report for Sequence Feature Glyma18g14910

Feature Type:	gene_model
Chromosome:	Gm18
Start:	14904314
stop:	14909788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g14910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03250	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr4:1425050-1427744 FORWARD LENGTH=507	SoyBase	E_val: 1.00E-76	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF77	Panther	HOMEOBOX TRANSCRIPTION FACTOR, PUTATIVE	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_F4JI72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper family protein n=2 Tax=Arabidopsis thaliana RepID=F4JI72_ARATH	SoyBase	E_val: 5.00E-74	ISS
UniRef100_I1N144	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N144_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g14910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g14910

Paralog	Evidence	Comments
Glyma08g41330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g14910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g118400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g14910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g14910

Limit To All Plant Sequences

>Glyma18g14910.2   sequence type=transcript   gene model=Glyma18g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTATTTATTATTTTGAGCAAAGCTGCATATTTTCCTTTCCTTTTCTTCAGCGTTCATTCATTCTGGAAAAAATAAAGCACAGTGAATTTCAATTCAACAATTAAAAACAAAAAAAAAACAAAAATTGATTTCCCTGTTCAATCAGAAGGTAAAAACAAAACCAAATGTGAAAGCTGATTGGAGGAAGAAGCAAATGAAATAAAAAAGAGAGAGAAATTGTTCTTCTGTCTCTATTGGCTTTCAACTTTCCCCAGAAGTTACTTTCTCTCTTTCTTTTCTCTATGACGAATTAAGTGTCAAATTGAATGAATCACACAGACCCACATGTTAATTTTGCATTTTCTCTTGGTTTGGGTCAAATGGGTCTCATTTTTCTGAGAACCCAGTGAAAACGCTTGCACCTTTGACTCCAAAAGCTGCAGAGTAGAGGGAGATTCATCACAATTCCTCACAACCATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGATGATCATGTAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACGGCTGAAACCAGTTCCTCAGCGGATTAAGTGTTGTTGTCAGATATGATATTTGTAGGGTTTCTCTATGCCATTGGTTTTGTACAGTCTATAGAGACAGATCCATTTTGCACAGTAACATGTAGAAAGACACACTAACATGACTAACTTGATTTGCTGTTGTGCTTGCTTATTTGCTTCTGTAACAAAAGAAACCCCACTCCCTACCCCTTTTCTTAAAATTTTGGATGTAAAATCTCATTTTCATGCAGCTGCTTGTGGTAGGAAGGATCCAAATGCAGTTTATAGATACAGTGTCTTTTTTTTTTTTCACAATGATTAATTTGTGGTGTGTTTGATCCACCTTTTCATCACGTTGAGCGTCAATCCAACATTTGAGGGGAATTTTCATGTTGGATTGACGTTCAACGTGCATTGAAAAGCGGGATTTGGCTTTTCCAAACACTCCATTGTAGTGCCTCTGGCATCTTAGTTTGGTTCAATTGGAGCCTTGGTTGGACTGGTTATCCACTTGTGCTTTTAGTATTTAGAAGAATAATTTTGATTGGTTTGGATTGAGGTGAAAGAACACCAGAAGATCTTTTGGAAAAGTGATTTAAATTGATCCTTCATTCATACTCAGTGTGCTTGCACTTACAATGTATGAAGC

Coding sequences of Glyma18g14910

Limit To All Plant Sequences

>Glyma18g14910.1   sequence type=CDS   gene model=Glyma18g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACGGCTGAAACCAGTTCCTCAGCGGATTAA

>Glyma18g14910.2   sequence type=CDS   gene model=Glyma18g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGATGA

Predicted protein sequences of Glyma18g14910

Limit To All Plant Sequences

>Glyma18g14910.1   sequence type=predicted peptide   gene model=Glyma18g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQRSAAEMPSSFSEDETAETSSSAD*

>Glyma18g14910.2   sequence type=predicted peptide   gene model=Glyma18g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQR*

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