Glyma18g14843 - SoyBase

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Report for Sequence Feature Glyma18g14843

Feature Type:	gene_model
Chromosome:	Gm18
Start:	14821792
stop:	14824152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g14843

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G33406	AT	Annotation by Michelle Graham. TAIR10: hAT dimerisation domain-containing protein / transposase-related \| chr5:12676126-12678403 REVERSE LENGTH=509	SoyBase	E_val: 3.00E-113	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF75	Panther	HAT DIMERISATION DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF04937	PFAM	Protein of unknown function (DUF 659)	JGI		ISS
PF05699	PFAM	hAT family dimerisation domain	JGI		ISS
UniRef100_F4KHA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH	SoyBase	E_val: 1.00E-110	ISS
UniRef100_UPI000233D774	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D774 related cluster n=1 Tax=unknown RepID=UPI000233D774	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g14843

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g14843 not represented in the dataset	Glyma18g14843 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g14843 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g118000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g14843

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g14843

Limit To All Plant Sequences

>Glyma18g14843.1   sequence type=CDS   gene model=Glyma18g14843   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATATAAGAGATTTTGAATTTGGTGAACCGATTGGATGTGATGGAAGTGAAGAAGATGATTTTGCAGACTCTTGTAATGTTACTGCAAGTGCAAAGACAAAGTGTGAGACTAAAAAAGGACCAATGGACAAATTTTGTAAGAATCTAGAAAATGCAATCAATCGGAGAAAAATGGAGATGTTGAGGAAAATGAACATAAGAGAGTCAATGGATAAGAATGAAGTATTGAAGGTGCATCAAAATATTGCTCGCTTTTGGTACCAAGCAGGTTTGTCATTCAACCTCATTAAATTGAAAAGCTTTGAGAACATGGTTGCAGCCATTGGTCAATATGGGCCACATTTGCCCATTCCTAGCTATCATGACATCAGAGTTCCACTCTTGAAGAAGGAAGTTGAATATACTGAAAATTTGATGAAAGGCCATAGGGAGCAATGGGTCAAGTATGGTTGTACTATTATGTCCAATGCATGGACTGATCGAAAACAAAGATGCATCATTAATTTTTTGATTAACTCTCAAGCTGGTACCATGTTTTTGAAGTTTGTTGATGGCTCTGATTTTGTAAAGACAGGTGAAAAGCTTTTTGAGTTGCTTGATGCCATTGTGGAGGAAGTTGGAGAAGAGAATGTTGTTCAAGTTGTAACCGATAATGGGAGCAACTATGTTTTAGAGGTTGGGTTTATCTATGCCTATTCTAGTACCTTACGTTTGTTGAGAAATTTTACAAACAAGAGGGAATTGGTGAGACATGCTATTACTAGATTTGCCACTTCTTATCTAACCTTGGAAAGGCTTCACAAAGAGAAAGCCAATATTAGAAAGATGTTTACTTCTGATGAATGGACCTTGAACAAGCTATCTAAGGAGCCTAAGGGGAAAAAAGCTGCAAAGGTAGTGCTCATGCCTTCTTTTTGGAATAGTGTGGTTTACACTCTTAAAGTCATGGCTCCACTTGTGAAAGTGCTTCGTCTTGTGGATGGTGAAAGGAAACCAACCATGGGCTATATTTATGAAGCAATGGACAAGGCAAAAGAAACAATTATCAAGTCTTTCAACAACAATGAAAGCAAGTACAAAGATGTGTTTGCAATCATTGATAAAAGATGGAATTGTCAGCTTCATAGGTCATTGCATGCAGCTGCCCACTTCTTAAATCCAGAGTTCTTTTATGACAACACTGACTTGGAGTTTGATTTTGAGAAAATTCTAACCGAGTTGCATCTTTACAAGATTGGTGCTTACCACTTTGGTTCCGACTTTGCAATGGCTCAAAGGAAAACCCATTCTCCTACATATTGGTGGCGAATGTTTGGGTCACAAACTCCAAATTTGCAGAAGCTAGCTATTAAGATTTTGAGTTTGACTTGCAGTGCTTCAGGATGTGAAAGAAATTGGAGTGTGTTTGAGCAAATTCATTCCAAAAAAAGAAATAGGCTTGAGCACAAGAGGTTGCATGATTTGGTGTTTGTCAAATACAACCAACAATTGAAGCCAAGATATAATGCAAGAGATGAAATTGATCCAATTTCTCTTAATGATATTGATGTATGCAATGAATGGCTCGTGGGAGAGATGGATCAAGATGATGATAATGATGCTGGAAATGATTTGGTATTTGAAGATGATGATGCTCTAAATTGGGCAACTGTGTATCAGGCTTCGGGGGCAATGGTTGTTGGATCTTCATCAAGGAAGCAAAAAGCAGTCCAAGAAAATGATGAGGATCTAGATGTTGAGGAGAATATTGATGTTGAATCTGAAGAAGAAGAAATCATGGTCAATTTTGAGGTGTCTGATGGGGAAGAGGGAGAGGGAGATGCTTCATTACCATATGATAACAACGAAGATGATTATGTTGGGATTGGAGAAGATGATTAG

Predicted protein sequences of Glyma18g14843

Limit To All Plant Sequences

>Glyma18g14843.1   sequence type=predicted peptide   gene model=Glyma18g14843   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIRDFEFGEPIGCDGSEEDDFADSCNVTASAKTKCETKKGPMDKFCKNLENAINRRKMEMLRKMNIRESMDKNEVLKVHQNIARFWYQAGLSFNLIKLKSFENMVAAIGQYGPHLPIPSYHDIRVPLLKKEVEYTENLMKGHREQWVKYGCTIMSNAWTDRKQRCIINFLINSQAGTMFLKFVDGSDFVKTGEKLFELLDAIVEEVGEENVVQVVTDNGSNYVLEVGFIYAYSSTLRLLRNFTNKRELVRHAITRFATSYLTLERLHKEKANIRKMFTSDEWTLNKLSKEPKGKKAAKVVLMPSFWNSVVYTLKVMAPLVKVLRLVDGERKPTMGYIYEAMDKAKETIIKSFNNNESKYKDVFAIIDKRWNCQLHRSLHAAAHFLNPEFFYDNTDLEFDFEKILTELHLYKIGAYHFGSDFAMAQRKTHSPTYWWRMFGSQTPNLQKLAIKILSLTCSASGCERNWSVFEQIHSKKRNRLEHKRLHDLVFVKYNQQLKPRYNARDEIDPISLNDIDVCNEWLVGEMDQDDDNDAGNDLVFEDDDALNWATVYQASGAMVVGSSSRKQKAVQENDEDLDVEENIDVESEEEEIMVNFEVSDGEEGEGDASLPYDNNEDDYVGIGEDD*

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