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Report for Sequence Feature Glyma18g14826

Feature Type:gene_model
Chromosome:Gm18
Start:14819415
stop:14825560
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g14826
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03340AT Annotation by Michelle Graham. TAIR10: ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810 SoyBaseE_val: 1.00E-128ISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR23077Panther AAA-FAMILY ATPASE JGI ISS
PTHR23077:SF18Panther CELL DIVISION CONTROL PROTEIN 48 AAA FAMILY PROTEIN (TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE) JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_I1LL20UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LL20_SOYBN SoyBaseE_val: 2.00E-127ISS
UniRef100_P54774UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein 48 homolog n=2 Tax=Glycine max RepID=CDC48_SOYBN SoyBaseE_val: 5.00E-127ISS

Expression Patterns of Glyma18g14826
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g14826 not represented in the dataset
Glyma18g14826 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g14826 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g117900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g14826
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g14826
>Glyma18g14826.1   sequence type=CDS   gene model=Glyma18g14826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTTTTAGATGATGTTGATCTAGAGAGAATTGCAAAAGATACTCATGGATATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTTCAATGCATCAGGGAGAAGATGGATGTCATTGATTTGGAAGATGAAAGTATTGATGCTAAAGTACTGAATTCTATGGCAGTTTCAAATGAGCATTTCTATATTGTTCTAGGAACAAGCAATTCATCTGCTTTACGAGAAATTGTTGTTGAGGTGCCTAATGTTAGCTGGGAGGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTATGGAGCACCCAGAAAAATTTGAGAAGTTTGGTATGTCACCGTCAAAAGGGGTTCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCCATGTGAAGGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTTACAAGACCAGACAATCAACTCCATGTGTCCTCTTCTTTGATGAGCTTGATTCCATTGCTACTCAATTGGGTTGA
Predicted protein sequences of Glyma18g14826
>Glyma18g14826.1   sequence type=predicted peptide   gene model=Glyma18g14826   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAKVLNSMAVSNEHFYIVLGTSNSSALREIVVEVPNVSWEDIGGLENVKRELQETVQYPMEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIHVKGPELLTMWFGESEANVREIFYKTRQSTPCVLFFDELDSIATQLG*






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