Report for Sequence Feature Glyma18g14781
Feature Type: gene_model
Chromosome: Gm18
Start: 14748414
stop: 14751229
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g14781
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G49710 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:18437845-18440010 FORWARD LENGTH=721
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7LSX0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LSX0_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233E578 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E578 related cluster n=1 Tax=unknown RepID=UPI000233E578
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g14781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g14781
Paralog Evidence Comments
Glyma08g41430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g14781 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma18g14781
Coding sequences of Glyma18g14781
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g14781.1 sequence type=CDS gene model=Glyma18g14781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAATGCACATTCCCGCTTCAACTTCAAACCTTCCGCAACCTTCTCAAAGCCTGCATAGCCCAAAGGGACCTCATAACTGGCAAAACCCTCCATGCCCTTTACTTCAAGTCCCTCATCCCACCCTCCACCTACCTGTCCAATCACTTCACCCTCCTCTACTCCAAATGTGGCTCCCTCCACAATGCCCAAACTTCCTTCGACCTCACCCAATACCCCAATGTCTTCTCCTACAACACCCTCATCAATGCCTATGCCAAACACTCCCTTATCCACCTCGCCCGCCAGGTGTTCGATGAAATTCCCCAACCAGACATTGTCTCTTACAACACCCTTATAGCTGCCTATGCTGATAGGGGTGAGTGTCGGCCAGCATTGAGGCTCTTTGCAGAAGTTAGAGAGCTTCGTTTCGGCCTTGACGGGTTTACATTGTCGGGCGTGATCATTGCATGTGGTGATGATGTTGGATTGGTGAGGCAGCTGCATTGCTTTGTGGTGGTGTGTGGGTATGATTGCTATGCTTCGGTGAATAATGCGGTGCTCGCGTGTTATAGTAGGAAGGGGTTTTTGAATGAGGCAAGGAGGGTGTTTAGGGAGATGGGGGAGGGTGGGGGCAGGGATGAGGTTTCGTGGAACGCGATGATCGTGGCATGTGGGCAGCACCGGGAGGGATTGGAGGCTGTGGAGTTGTTTAGGGAGATGGTTAGGAGGGGTTTGAAGGTTGATATGTTTACTATGGCGAGTGTTTTGACTGCGTTTACTTGTGTTAAGGATTTGGTTGGGGGGATGCAGTTTCATGGAATGATGATTAAGAGTGGGTTCCATGGGAATTCACATGTTGGGAGTGGCTTGATTGATTTGTATTCTAAGTGTGCTGGTGGCATGGTGGAATGTAGGAAGGTGTTTGAGGAGATTGCTGCACCGGATTTGGTTCTTTGGAACACGATGATTTCTGGATTTTCACAGTATGAGGACTTGTCTGAAGATGGTATTTGGTGTTTCCGGGAGATGCAGCACAATGGTTTTCATCCGGATGATTGTAGTTTCGTGTGTGTGACTAGTGCTTGTTCTAATTTGTCATCCCCTTCTGTGGGAAAGCAGGTTCATGCATTGGCTATCAAATCTGACATTCCTTATAATCGTGTTTCAGTGAATAATGCTCTTGTTGCCATGTATTCCAAATGTGGGAATGTTCATGATGCAAGAAGGGTTTTTGATACAATGCCAGAACATAACATGGTGTCGCTGAATTCAATGATTGCAGGCTATGCACAACATGGTGTTGAGGTTGAATCGCTCAGGCTTTTTGAACTGATGCTGCAGAAAGACATAGCACCTAACACCATAACTTTCATAGCTGTTCTTTCTGCATGTGTACACACTGGAAAAGTTGAAGAGGGTCAGAAATATTTCAATATGATGAAAGAAAGGTTTCGGATTGAACCAGAAGCAGAACATTATTCATGCATGATAGATCTTTTGGGTCGGGCAGGCAAACTCAAGGAGGCTGAGAGGATTATTGAGACAATGCCATTTAATCCTGGTTCTATTGAATGGGCTACTTTGCTTGGTGCGTGTAGGAAGCATGGAAATGTGGAACTTGCTGTGAAAGCGGCCAATGAGTTCCTCCAGCTGGAACCTTATAACGCTGCTCCATATGTGATGCTTTCAAATATGTATGCCAGCGCTGCCAGATGGGAAGAGGCTGCAACAGTTAAAAGGCTGATGCGGGAAAGAGGAGTGAAGAAGAAACCTGGTTGTAGTTGGATTGAGATAGATAAGAAGGTGCATGTCTTTGTGGCTGAAGACACTTCACATCCAATGATAAAAGAGATTCATGTGTACATGGGGGAGATATTAAGGAAAATGAAGCAAGCAGGATATGTACCAGATATAAGATGGGCATTGGTGAAAGACGAAGAGGTAGAGCCAGATGAGAAAGAAAGACGGTTACTGTATCACAGTGAGAAGCTAGCTGTTGCATTTGGCCTGATCTCCACTGAAGAATGGGTGCCTATACTGGTTGTAAAGAACCTAAGAATTTGTGGTGATTGTCACAATGCCATCAAACTTATTTCAGCCATCACTGGTAGGGAAATCACTGTTAGAGATACTCACAGGTTTCATTGCTTTAAGGAAGGGCACTGTTCATGCGGGGACTATTGGTGA
Predicted protein sequences of Glyma18g14781
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g14781.1 sequence type=predicted peptide gene model=Glyma18g14781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQCTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW*