Glyma18g14770 - SoyBase

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Report for Sequence Feature Glyma18g14770

Feature Type:	gene_model
Chromosome:	Gm18
Start:	14725007
stop:	14729736
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g14770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80930	AT	Annotation by Michelle Graham. TAIR10: MIF4G domain-containing protein / MA3 domain-containing protein \| chr1:30405774-30409499 REVERSE LENGTH=900	SoyBase	E_val: 0	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0016070	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG2140	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR18034	Panther	CELL CYCLE CONTROL PROTEIN CWF22	JGI		ISS
PTHR18034:SF3	Panther	gb def: similar to hypothetical protein, mgc:7531, clone mgc:7531 [mus musculus]	JGI		ISS
PF02847	PFAM	MA3 domain	JGI		ISS
PF02854	PFAM	MIF4G domain	JGI		ISS
UniRef100_B9SWX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cell cycle control protein cwf22, putative n=1 Tax=Ricinus communis RepID=B9SWX3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N138	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N138_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g14770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g14770

Paralog	Evidence	Comments
Glyma08g41440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g14770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g14770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g14770

Limit To All Plant Sequences

>Glyma18g14770.1   sequence type=CDS   gene model=Glyma18g14770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGAAGACACAGCAGCAGCAGCAGCGAGTCAAGTGAGGATGACGTGAGAAAACGCCGTGGTAGTGAATCTGAGGATGGGGAGAGGGATAGGTATCGACACGGTGGTGGGAGTAGTAAGAAGAGTTCCGGTCACTTCAGTCACAGGGCGAACGGTGATGACAGTGATTCGGGAGAAGAAAGAAATGGTGCTAAGAGGGATGGGAAGAGTAAGAGTAGGGAGAGAAAGGAGGAGCCTGAGAGCTCTGAGGAGGAGGGTCAGATTGTGAGCAAAGAGAGGGTTAGGGAGGAGAAGGAGGAAGATGGGAGATTGCAGTGGTGCCATGATGGGCGTGGAAGGAGAGACGACGAAGGAGATGACCGGGGTGGTAGGGAATCTCGTCGTGGGAACGATCAGGATGAAAGGCTAGGGGAGAGAGAGAGTCACAGATTGCATCCTGGTGATAGATGGCGTGGAGGTGATGAGGCCAGGCGGAAATTTAATGATCGCCGTGGGCGTCATGATTCGGAGGAAGAGGATCACAGGGAGCTGGCCAGGAAATCGGAAAGGGATAGATATAGGGATAGGGATAGGAGGCGGAAAGTTGAAAAGGGTGGTGACAATGAGAGGGATTGCCACATGCGTCATTATTCGGAGGAAGAAGATGATAGGGAGTTGGCTAGGAAATCAGATAGGGATAGGAGGCGTAGAGTTGAAAAGGATGGTGGCAGTGAGAGGAACCATAGGGAGAAGGATGTTAGCAAACGGCAAGAAGAAAGTAGGAGGAAAGAGGATGGAAATGGAAGAATGGTTGAAGATGCAAAGCCTCAACAACAGGCAACAATATTGGGAGCTAACCTGAATGGTGATGCATCGAATTTGGGCAAGAGTGGAGGTGTTTACATTCCCCCCTTTAAGATGGCAATGATGATGAAAGAAGTTCAGGATAAAAGTAGTGTAGAATATCAAAGGTTAACGTGGGATGCTTTGAGAAAGAGCATTAATGGGCTTGTAAATAAGGTTAATGCTACTAATATAAAAAATATAATTCCAGAATTGTTTGCGGAAAACCTGATTAGGGGAAGGGGACTCTTTTGTCGTTCATGTATGAAGTCACAGATGGCATCTCCAGGATTTACAGATGTTTTTGCTGCTTTGGTTGCTGTCGTTAATACTAAGTTTCCTGAAGTGGGGGATCTTTTGCTAAGAAGGATTGTTTTGCAGCTTAAGAGAGCTTATAAGCGGAATGACAAGCCTCAATTACTAGCAGCTGTTAAATTTATAGCGCATCTGGTGAATCAGCAAGTGGCTCATGAGATCATTGCTCTAGAGTTACTCACAGTTTTACTCGAGAAACCTACTGATGACAGTGTTGAAGTAGCTGTTGGTTTTGTCACAGAATGTGGTTCAATACTGCAGGATCTCTCACCTAAAGGTCTTCATGCGTTTTCGTGGATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGCTTATTTGCAATAAGAAAAGCGAAGTTTCAGGGCTATCCGGCTGTTCGTCCTGAACTAGATCTTGTGGAGCAGGAAGATCAGATAACTCATGAAGTCTCCTTGGATGAGGAGATAGATCCTGAGATTTCCCTTGATATATTCAAGCCAGACCCCAATTTCCTGGAGAATGAGAAGCGTTATGAAGAGTTGAAGAAATCAATGTTGGGTGAGGAATCTGAGGATGATGAGGAAGGCTTGGATTCTGAGTCAGACGATGACGATGAAGATGATGACTCTGATGAAGAGGACGAAGAACAGATGCAGATAAAAGATGAAACAGAGACAAATCTGGTCAATCTTCGAAGGACAATATACTTAACAATTATGTCTAGTGTTGATTTTGAGGAAGCTGGTCATAAGCTTCTGAAAATTAAGCTAGAGCCAGGTCAAGAGATGGAGTTGTGCATTATGCTTTTGGAATGTTGCAGCCAAGAGAGAACCTATCTCCGATATTATGGTCTTTTGGGGCAGCGTTTCTGCATGATTAACAAAGTACACCAAGAAAATTTTGAAAAGTGCTTTGTGCAACAGTACTCCATGATTCACCGACTTGAAACAAATAAACTGCGAAATGTGGCAAAGTTTTTTGCTCATTTACTTGGCACAGATGCTCTACCTTGGCATGTTTTATCATATATACGCTTGACTGAAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAGGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATTCAATGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAAAAAACACACGGTTCTGCATTAACTTCTTTACATCCATTGGTCTTGGTGGTCTTACCGAGAACCTACGTGAGTATTTGAAGAATATGCCACGTCTTATCATGCAACAACAGAAACAAGTTTCAGAATCTGAATCAGATGATGAGTCAGGGAGTTCTGATTCATCAGATTCTGGAACTGCTAGTTCAGAGTCAGAGTCAGACTCAGCTAGTTCTGATGAAAGTGACAGAAGACGAAGAAAGCGGAGGAGAAAGTGA

Predicted protein sequences of Glyma18g14770

Limit To All Plant Sequences

>Glyma18g14770.1   sequence type=predicted peptide   gene model=Glyma18g14770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARRHSSSSSESSEDDVRKRRGSESEDGERDRYRHGGGSSKKSSGHFSHRANGDDSDSGEERNGAKRDGKSKSRERKEEPESSEEEGQIVSKERVREEKEEDGRLQWCHDGRGRRDDEGDDRGGRESRRGNDQDERLGERESHRLHPGDRWRGGDEARRKFNDRRGRHDSEEEDHRELARKSERDRYRDRDRRRKVEKGGDNERDCHMRHYSEEEDDRELARKSDRDRRRRVEKDGGSERNHREKDVSKRQEESRRKEDGNGRMVEDAKPQQQATILGANLNGDASNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLSPKGLHAFSWILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVEQEDQITHEVSLDEEIDPEISLDIFKPDPNFLENEKRYEELKKSMLGEESEDDEEGLDSESDDDDEDDDSDEEDEEQMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDSMMQESFESIFPKDNPKNTRFCINFFTSIGLGGLTENLREYLKNMPRLIMQQQKQVSESESDDESGSSDSSDSGTASSESESDSASSDESDRRRRKRRRK*

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