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Report for Sequence Feature Glyma18g14750

Feature Type:gene_model
Chromosome:Gm18
Start:14644591
stop:14648372
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g14750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11260AT Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr5:3593583-3594800 REVERSE LENGTH=168 SoyBaseE_val: 3.00E-55ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0010074GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity SoyBaseN/AISS
GO:0010099GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0031539GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0042753GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051276GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome organization SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003690GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF21Panther CELLULOSE SYNTHASE-RELATED JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_Q39895UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP36 n=1 Tax=Glycine max RepID=Q39895_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q39895UniRef Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP36 n=1 Tax=Glycine max RepID=Q39895_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g14750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g14750
ParalogEvidenceComments
Glyma08g41450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g14750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g117100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g14750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g14750
>Glyma18g14750.2   sequence type=transcript   gene model=Glyma18g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACTCCTTCATCACCGTCGGATCTTTCAGGATCCAACGGCCACAGTTACGCTTTGAATAACAGAACATGGCAGCGGGAACAACAACAACTGAAGTAAGAAAGAGAGAGAGAGAGAGAAAGAGAAGTGTGTAGTTGGTGAAGTTTTTGAGAAGAATATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAAACTTATAGATGGAGTAGATATAGAGAGAGAGAAAGAGAAAAAAATTAAACATTAGTTGATGATTCTTTCTAGGTGTGCGTTTGGAATACAATGAAGTAAAGGATGAACCTTAAGACATGCTTTGTCCTAAAATAGTGTGATCTGATGTACCATTGTTGATGAGTAATGTAATTATCATACACAGTTTTTTACAGTCTCATTTTAATTAATAATTATCAAACTACTTGATTACTTATGGTTAACACCATTTGGTGAGGAGATAAGGTGTGGTTGATTAATCGTTTGTCAAATATATTTAATTGAATCCCTAATGAATTTGAAATAGATTGATATTAA
Coding sequences of Glyma18g14750
>Glyma18g14750.1   sequence type=CDS   gene model=Glyma18g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAA

>Glyma18g14750.2   sequence type=CDS   gene model=Glyma18g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAA
Predicted protein sequences of Glyma18g14750
>Glyma18g14750.1   sequence type=predicted peptide   gene model=Glyma18g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSGGMVTGSHERNELVRVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDLFVACHECGFPLCHSCYEYELKNVSQSCPQCKTTFTSRQEGAEVEGDDDDEDDADDLDNGINYGQGNNSKSGMLWEEDADLSSSSGHDSHIPNPHLVNGQPMSGEFPCATSDAQSMQTTSDPMGQSEKVHSLPYADPKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERAQGTGDSQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE*

>Glyma18g14750.2   sequence type=predicted peptide   gene model=Glyma18g14750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSGGMVTGSHERNELVRVRHGSDSGICQICGDTIGLTATGDLFVACHECGFPLCHSCYEYELKNVSQSCPQCKTTFTSRQEGAEVEGDDDDEDDADDLDNGINYGQGNNSKSGMLWEEDADLSSSSGHDSHIPNPHLVNGQPMSGEFPCATSDAQSMQTTSDPMGQSEKVHSLPYADPKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERAQGTGDSQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE*






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