Report for Sequence Feature Glyma18g14620
Feature Type: gene_model
Chromosome: Gm18
Start: 14477241
stop: 14483374
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g14620
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G43020 AT
Annotation by Michelle Graham. TAIR10: polyamine oxidase 2 | chr2:17891945-17894440 FORWARD LENGTH=490
SoyBase E_val: 0 ISS
GO:0006598 GO-bp
Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0008131 GO-mf
Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity
SoyBase N/A ISS
GO:0046592 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polyamine oxidase activity
SoyBase N/A ISS
KOG0029
KOG
Amine oxidase
JGI ISS
PTHR10742 Panther
AMINE OXIDASE
JGI ISS
PTHR10742:SF30 Panther
AMINE OXIDASE
JGI ISS
PF01593 PFAM
Flavin containing amine oxidoreductase
JGI ISS
UniRef100_B9S6G9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9S6G9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N129 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N129_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g14620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g14620
Paralog Evidence Comments
Glyma08g41570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g14620 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g116300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g14620
Coding sequences of Glyma18g14620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g14620.1 sequence type=CDS gene model=Glyma18g14620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATCGAGAACTAAGAGTAATCCCCAATTAACTAGAGCTCTATGCTATGGAAACGATGGCAAGCAGCAGGGAAGGTCACCATCCGTTATTGTCATTGGCGGTGGCATGGCTGGGATTGCTGCTGCTCGTGCACTCCATAATGCTTCGTTTCAGGTTGTTCTCTTAGAGTCAAGGGATAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTGGGAGCATCATGGTTGCATGGAGTTTCCAACGAGAATCCGCTGGCTTCGGTGATTGGGAGGCTAGGTCTACCTCTTTACCGTACTAGTGGGGATAACTCCGTACTCTATGACCATGATTTGGAAAGCTATGCACTTTTTGATATGGATGGGAAACAAGTTCCTCCAGAGTTGGTAACAAAAGTTGGTGAAATATTTGAGACAATTTTACAGGAGACAGATAAAATAAGACAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCCATTGTTTTTGACAGGAAGCCGGAATTGAGGTTGGAGGGGCTTGCGCATAAGGTGCTTCAGTGGTACTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATACTATTTCACTGAAAGGATGGGACCAGGAGGTGCTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGTTACTTGCCTGTTATAAATACCCTAGCCAAGGGACTTGATATTCTCTTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACAGTGGAAAGTGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTCAAGGCAAAGAAAATATTGTTTAAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCGGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACATCTTATGGATGTAGCTACTTCCTTAATCTCCACAAGGCCGCCGGTCATGCTGTTCTGGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGTCTGATGAAGCAGCCGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTCTTCCAGATGCTTCTTCACCGATTCAGTATCTTGTGTCTCGGTGGGGATCAGATATAAATTCACTAGGTTCATATAGCTACGATGCAGTTGGGAAACCCCATGAACTATATGAGAGGCTACGGGTCCCAGTAGATAACTTGTTCTTTGCAGGGGAAGCAACGAGTATGAGCTATCCAGGATCTGTCCATGGGGCATTCTCCACTGGAATGATGGCCGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGCTTCCTTGTCTATCCCACTTCAGATATCTCGTCTGTAA
Predicted protein sequences of Glyma18g14620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g14620.1 sequence type=predicted peptide gene model=Glyma18g14620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESRTKSNPQLTRALCYGNDGKQQGRSPSVIVIGGGMAGIAAARALHNASFQVVLLESRDRIGGRIHTDYSFGFPVDLGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSVLYDHDLESYALFDMDGKQVPPELVTKVGEIFETILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGLAHKVLQWYLCRMEGWFAADSDTISLKGWDQEVLLPGGHGLMVRGYLPVINTLAKGLDILLGHRVTKVVRRYNGVKVTVESGKTFFADAAVIAVPLGVLKAKKILFKPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTSYGCSYFLNLHKAAGHAVLVYMPSGQLAKDVEKMSDEAAVNFAFMQLKKILPDASSPIQYLVSRWGSDINSLGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAFSTGMMAAEDCRMRVLERYGEVDLFQPVMGEEASLSIPLQISRL*