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Report for Sequence Feature Glyma18g14560

Feature Type:gene_model
Chromosome:Gm18
Start:14437814
stop:14438648
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g14560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23535AT Annotation by Michelle Graham. TAIR10: KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159 SoyBaseE_val: 4.00E-67ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0015934GO-cc Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR12903Panther MITOCHONDRIAL RIBOSOMAL PROTEIN L24 JGI ISS
PF00467PFAM KOW motif JGI ISS
UniRef100_B9T402UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ribosomal protein L24, putative n=1 Tax=Ricinus communis RepID=B9T402_RICCO SoyBaseE_val: 1.00E-66ISS
UniRef100_I1N127UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N127_SOYBN SoyBaseE_val: 2.00E-83ISS

Expression Patterns of Glyma18g14560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g14560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g116100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g14560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g14560
>Glyma18g14560.1   sequence type=CDS   gene model=Glyma18g14560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGGGATAATGTTATGATAACAAGGGACATAGATAAGGGTGAAACTGGGATTATAAAGCGTGTCATTCGCTCTCAAAATTATGTCATTGTAAAAAAGCATATCAAGCAAGGGAAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGATAGGGTATCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTTAGAGTGTCTAGAGGAATAGGAGAATTAGGGTCCATAGTCCCTCGTCCCAAGATCCTAAAGATAAGAACTATCTCAAGACCTACAATCTGTAAGTATCTAACAAGCTTATGTTTTTTTCTTGTATGA
Predicted protein sequences of Glyma18g14560
>Glyma18g14560.1   sequence type=predicted peptide   gene model=Glyma18g14560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWKAAEKLIRHWKILRGDNVMITRDIDKGETGIIKRVIRSQNYVIVKKHIKQGKGHEGGIFTVEAPLHASNVQVLDPVIGYPCKVGVKYLEDGTKVRVSRGIGELGSIVPRPKILKIRTISRPTICKYLTSLCFFLV*






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