SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43010 | AT | Annotation by Michelle Graham. TAIR10: phytochrome interacting factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428 | SoyBase | E_val: 8.00E-45 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009704 | GO-bp | Annotation by Michelle Graham. GO Biological Process: de-etiolation | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway | SoyBase | N/A | ISS |
| GO:0010161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red light signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0010600 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of auxin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010928 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR12565 | Panther | STEROL REGULATORY ELEMENT-BINDING PROTEIN | JGI | ISS | |
| PTHR12565:SF7 | Panther | CENTROMERE-BINDING PROTEIN 1, CBP-1 | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_B6SV80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PIL5 n=1 Tax=Zea mays RepID=B6SV80_MAIZE | SoyBase | E_val: 2.00E-55 | ISS |
| UniRef100_I1N126 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N126_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g14530 not represented in the dataset |
Glyma18g14530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g41620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g115700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g14530.1 sequence type=CDS gene model=Glyma18g14530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCACCAATCAAAAGAAGCCCATGATAGGGGTGGACCAAGAGCTTGTAGAGCTTCAGTGGCAAAATGGCCAGGTAGTGATGCACAGCCAAACACACAGAAAACCGTTTGTGAATTCCATCACGCCGAGACCGCTTCGGAGGAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAGTTCTGTTCAAACCTTTTATCTGAACTGGCACCTTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGGAAGTTTACCAAATTGGATGCCTCTAGTACCCCCCATGTGACTGAAACTTCGCAATCACCTACCATGAAATCTTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATGACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCTCTTAATGTTTCTTCAGCATCGGCTAACGCGCATTTTAGGGACAAAATTACTGGTAACATGTCAAAAAATGAGATTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTCTGGACTACTACTTTATCCGCCGAGCCTGAAGCTGTTAGAGACCATGTGCCGAGAACAAGTCCTCAGAATGAAAAAGGGAAATCGGAGATGCTTGAACCAACTACAACTTCATCATCCGGTGGCTCAGGTAGTAGTCTTGGAAAAAATTGTTCGCTATCTACGAGAAACCAGGGCCAAAAAAGAAAAGGAATAGATGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCACTTGGAAACAAGTCATCTCAACGTGCAGGGTTGGCTCGAAGGAACCGCGCTGCTGAAGTGCATAATCTATCTGAAAGGAGAAGGAGAGACCGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATTATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGCTACACCGCCTTTCCCTCCTATTCACAATCCGATGCAATTACCGAGACTGCCGCTTGATCAGTCTGTATCTGCGTCTCAGACACCAAACCAGACATTAATGAGCCAAAATCCTATTTTGGGTGCCTTTAATTACCACAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGGGGTACGGCATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTAAGCCACTTACATTCTTCACCTTGCTTTGGCTAACAACAAAATGA
>Glyma18g14530.1 sequence type=predicted peptide gene model=Glyma18g14530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNSVPDWNFGSDSCVTTTNQKKPMIGVDQELVELQWQNGQVVMHSQTHRKPFVNSITPRPLRRNFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELAPCEVESYKQIKPFEEGKFTKLDASSTPHVTETSQSPTMKSSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGSCKVQNFSHFSAPLNVSSASANAHFRDKITGNMSKNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSAEPEAVRDHVPRTSPQNEKGKSEMLEPTTTSSSGGSGSSLGKNCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQRAGLARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPIMFPGIQHYMSQMGMGMATPPFPPIHNPMQLPRLPLDQSVSASQTPNQTLMSQNPILGAFNYHNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQGVRHSQTMITPSNSSGNMSGAANIDEAVSGKMGKPLTFFTLLWLTTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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