Report for Sequence Feature Glyma18g14390
Feature Type: gene_model
Chromosome: Gm18
Start: 14156022
stop: 14159589
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g14390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G36900 AT
Annotation by Michelle Graham. TAIR10: membrin 11 | chr2:15491615-15492587 REVERSE LENGTH=225
SoyBase E_val: 3.00E-89 ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0000139 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane
SoyBase N/A ISS
GO:0005789 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005484 GO-mf
Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity
SoyBase N/A ISS
KOG3251
KOG
Golgi SNAP receptor complex member
JGI ISS
PTHR21230 Panther
VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
JGI ISS
PTHR21230:SF1 Panther
MEMBRIN
JGI ISS
PF12352 PFAM
Snare region anchored in the vesicle membrane C-terminus
JGI ISS
UniRef100_G7K371 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Golgi SNAP receptor complex member n=1 Tax=Medicago truncatula RepID=G7K371_MEDTR
SoyBase E_val: 2.00E-114 ISS
UniRef100_I1N120 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N120_SOYBN
SoyBase E_val: 4.00E-159 ISS
Expression Patterns of Glyma18g14390
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g14390
Paralog Evidence Comments
Glyma08g41710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g14390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g114700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g14390
Coding sequences of Glyma18g14390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g14390.1 sequence type=CDS gene model=Glyma18g14390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGGAGGTGGAGGAACGCTCTCGGAGATTCACCAATCCGCGAAGAAGCTCCTGCTTAGGTCTCGCGACGGCCTCGAACGCCTCGAGTATTCTGCCCCCGCCGCTGCCGCCGTCTCCGGCGCCGACTCCGAGCTGTCGTTCGCCGTGAAAAAGGACATCACACAGATCCAATCCCTCTGCGTCGAGATGGACCGACTCTGGCGATCTATCGCCGCAAAACCTCAGCGCGATCTATGGAAAAGAAAAGTGGAACAAATAGCTGAAGAGGCTGAATCTCTGAGAGCAAGTTTGGATAAATATAACTTACGGAATCAGAAACGAATGAGAGAAGCTAATGAGAGAGCAGAACTCTTGGGACGAGCTAATGGGGATTCTGCTCATGTTTTGAGAATTTATGACGAGGAGGCACAAGCATTACAGTCAGTTCGCTCTTCTTCCCAGGAACTGGAAAATGCAAATGCACTTGGGGAGGCCATCCTTTCTTCAATACATGGCCAAAGAGAACGCTTGAAGAGTGCACATCGAAAAGCATTGGACATCCTCAATACAGTGGGGATATCAAACTCTGTTTTGAGGCTAATTGAGAGACGAAACCGAGTCGACCAATGGATCAAATATGCAGGGATGCTATTGACTGTCATTTTCCTGTTAGCGTTTATTATGTGGAGACATTGA
Predicted protein sequences of Glyma18g14390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g14390.1 sequence type=predicted peptide gene model=Glyma18g14390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGGGGTLSEIHQSAKKLLLRSRDGLERLEYSAPAAAAVSGADSELSFAVKKDITQIQSLCVEMDRLWRSIAAKPQRDLWKRKVEQIAEEAESLRASLDKYNLRNQKRMREANERAELLGRANGDSAHVLRIYDEEAQALQSVRSSSQELENANALGEAILSSIHGQRERLKSAHRKALDILNTVGISNSVLRLIERRNRVDQWIKYAGMLLTVIFLLAFIMWRH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
