Glyma18g13750 - SoyBase

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Report for Sequence Feature Glyma18g13750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	13313422
stop:	13315214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g13750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07900	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr5:2520188-2521405 FORWARD LENGTH=405	SoyBase	E_val: 8.00E-83	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1267	KOG	Mitochondrial transcription termination factor, mTERF	JGI		ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PTHR13068:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_D7M0N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial transcription termination factor family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M0N3_ARALL	SoyBase	E_val: 3.00E-82	ISS
UniRef100_I1N112	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N112_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g13750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g13750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g112400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g13750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g13750

Limit To All Plant Sequences

>Glyma18g13750.1   sequence type=CDS   gene model=Glyma18g13750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCTAATTTTCTCCTCATTGCAAGATTAACTGCGTCATCATCATTCACACGCTACAAGAGCACCCATATCCCATTGGGTTCTCTGTTGCAACACAAACACACAGCTTCACTTTTTTTCTTCAATTCATTCACTTCAGCTACCTCTTCTGATTCTGAATCAGATGGAAACCACCATAAAGGTGACACCTTTACTGTGTCGTACCTCATCAACTCATGTGGGGTGTCCCCAACACTGGCTAGGGAACTCTCCAACAGGGTCAATTTAAAAAACCCTAATGGCCCAAATGCTGTTCTTGATCTTCTCAACAACTATGGGTTCTCCAAAACACAGCTTGCAAAACTTGTGGTGAGACATCCTTTAGTGCTTGTTGCAAAAGCAAAGAAAACCCTTTTGCCTAAACTCAAGTTCTTTCGTTCTATTGGGGTCTCCGACACTGACATGCCAAAAATCCTGATTGCTAATCATTGTATCTTGGAGAGGAGCTTGGAAAAATGCCTCATCCCACGTTATGAGTTCCTAAAGAGTGTACTTTGTGATGATCGGGAAGTTGTTAGAGCTTTGAAAAGTTCCCCTCTTGGTTTTGTATATGGTGACTTAGTGAATGCCTTGGTTCCAAACATTAAAATTTTGAGGCAATCTGGTGTGTCTCAGGCATCCATCTCTTTCCTACTGACCATTGCTCTGCCTGCAGCATATGTGGAGCATTCCAGATTTGTGGAAGCTGTGAAGACAGTTAAGGAAATTGGGTTTAGTCCTTTGAAAACAAATTTTGTCGTGGCTATTTCCGTGCTTACAACTATGAGGAAAACAGTCTGGAATTCAAGGTTTGAGGTTTATGAGAGTTGGGGCTGGAACCGTGAAATGGCTCTTCGAGCATTTAGAAAGTTTCCTGGTTTTATGAAGTTTTCAGGGGAGACGTTTACCAAAAAAATGAGTTTCCTGGTGAAGGATATGGGTTGGCCATCTGAAGCTATTGCTGAATATCCTCAAGTTGTAGCATACAGCTTGGAGAAGAGAATTATCCCTAGATTCTCTGTTATCAAAATCTTGAAATCAAAAGGTCTGCTTGAGAAAAACATGCACTTTAGTTCCATTATTTGCACAGCTGAGGAAAAGTTTTTGGAGAAATTTGTCGTCAATTTTCAGAAAATTTTGCCTTTCTTACCAGATGTTTACAGAGGTTTGATCAATCCTTCAAATGTATTGTAG

Predicted protein sequences of Glyma18g13750

Limit To All Plant Sequences

>Glyma18g13750.1   sequence type=predicted peptide   gene model=Glyma18g13750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSNFLLIARLTASSSFTRYKSTHIPLGSLLQHKHTASLFFFNSFTSATSSDSESDGNHHKGDTFTVSYLINSCGVSPTLARELSNRVNLKNPNGPNAVLDLLNNYGFSKTQLAKLVVRHPLVLVAKAKKTLLPKLKFFRSIGVSDTDMPKILIANHCILERSLEKCLIPRYEFLKSVLCDDREVVRALKSSPLGFVYGDLVNALVPNIKILRQSGVSQASISFLLTIALPAAYVEHSRFVEAVKTVKEIGFSPLKTNFVVAISVLTTMRKTVWNSRFEVYESWGWNREMALRAFRKFPGFMKFSGETFTKKMSFLVKDMGWPSEAIAEYPQVVAYSLEKRIIPRFSVIKILKSKGLLEKNMHFSSIICTAEEKFLEKFVVNFQKILPFLPDVYRGLINPSNVL*

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