Glyma18g13260 - SoyBase

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Report for Sequence Feature Glyma18g13260

Feature Type:	gene_model
Chromosome:	Gm18
Start:	12739321
stop:	12746700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g13260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06550	AT	Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein \| chr1:2003834-2006564 REVERSE LENGTH=387	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003860	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyisobutyryl-CoA hydrolase activity	SoyBase	N/A	ISS
KOG1684	KOG	Enoyl-CoA hydratase	JGI		ISS
PTHR11941	Panther	ENOYL-COA HYDRATASE-RELATED	JGI		ISS
PTHR11941:SF19	Panther	3-HYDROXYACYL-COA DEHYDROGENASE	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
UniRef100_B9SKX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enoyl-CoA hydratase, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SKX9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_C6THR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6THR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g13260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g13260

Paralog	Evidence	Comments
Glyma08g42070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g13260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g109900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g13260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g13260

Limit To All Plant Sequences

>Glyma18g13260.2   sequence type=transcript   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGACACGACAGATTTCCGTTGACTATGTTGAGTTCACTTTCTTCCAATTCTCTTCACAGTATCTTTACCTCAATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGAGAAATTCCTATGTCTGTTAAATGTTGCTTCTTTTAGAATTCCCCCAAAAATATGTCATGGATTTCTGTACTTTCTGGTATGCATTAATCCAGGCTACTTTTTGAGTTCTTGAACAAATTTCAACAGATGAAAGAAGTTCATGAAGAGTAGTCCTCTAAGTTTGGAGTATTAATTTTTGGTGTACAATGACAATACCAAGATTTGAACTTAGAATTTTATGCAAATTACTCAAACTCCTTACTACTAAGCTGTTGTGGGTTGAATGGTTTCATGATACGAGAGAGCATTGATAAGCTGGTTGTTGCTTTTTGCACTTGCTCTATTGCTTCCTCCACATTTTATTGCATTTGGAAAGCCCATTCTAAGGTCCCGGTTGGATCAGTCGGACTGAACTCAGTCTCACAACTATGCCAATTTGTATTATGCATACTTTAATTTTTAAATTCTTGGGTACAACTTTAATTTATAATTTATAATTTATAATCAGTTCATACT

>Glyma18g13260.3   sequence type=transcript   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATTGTTTGATTGTGCAGTATCTTTACCTCAATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGAGAAATTCCTATGTCTGTTAAATGTTGCTTCTTTTAGAATTCCCCCAAAAATATGTCATGGATTTCTGTACTTTCTGGTATGCATTAATCCAGGCTACTTTTTGAGTTCTTGAACAAATTTCAACAGATGAAAGAAGTTCATGAAGAGTAGTCCTCTAAGTTTGGAGTATTAATTTTTGGTGTACAATGACAATACCAAGATTTGAACTTAGAATTTTATGCAAATTACTCAAACTCCTTACTACTAAGCTGTTGTGGGTTGAATGGTTTCATGATACGAGAGAGCATTGATAAGCTGGTTGTTGCTTTTTGCACTTGCTCTATTGCTTCCTCCACATTTTATTGCATTTGGAAAGCCCATTCTAAGGTCCCGGTTGGATCAGTCGGACTGAACTCAGTCTCACAACTATGCCAATTTGTATTATGCATACTTTAATTTTTAAATTCTTGGGTACAACTTTAATTTATAATTTATAATTTATAATCAGTTCATACT

Coding sequences of Glyma18g13260

Limit To All Plant Sequences

>Glyma18g13260.1   sequence type=CDS   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGA

>Glyma18g13260.2   sequence type=CDS   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGTTCACTTTCTTCCAATTCTCTTCACAGTATCTTTACCTCAATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGA

>Glyma18g13260.3   sequence type=CDS   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGA

Predicted protein sequences of Glyma18g13260

Limit To All Plant Sequences

>Glyma18g13260.1   sequence type=predicted peptide   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVVTLNRPRQLNAISPELVSQLATYLEKWEKDEKAELVIIKGAGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGYLGEYLALTGGRLSGKEIVAVGVATHFVPYEKIVELEKRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIINECFSKDSLEEIIKSLEAEAYKEGNGWIDAVLKGMKRSSPTALKIALRSVREGRNQTLPECLKKEFRLTMNILRTTISKDMYEGIRALTIDKDNTPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*

>Glyma18g13260.2   sequence type=predicted peptide   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSSLSSNSLHSIFTSMAPSSAVPDEQVVVGEEIEHVRVVTLNRPRQLNAISPELVSQLATYLEKWEKDEKAELVIIKGAGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGYLGEYLALTGGRLSGKEIVAVGVATHFVPYEKIVELEKRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIINECFSKDSLEEIIKSLEAEAYKEGNGWIDAVLKGMKRSSPTALKIALRSVREGRNQTLPECLKKEFRLTMNILRTTISKDMYEGIRALTIDKDNTPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*

>Glyma18g13260.3   sequence type=predicted peptide   gene model=Glyma18g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVVTLNRPRQLNAISPELVSQLATYLEKWEKDEKAELVIIKGAGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGYLGEYLALTGGRLSGKEIVAVGVATHFVPYEKIVELEKRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIINECFSKDSLEEIIKSLEAEAYKEGNGWIDAVLKGMKRSSPTALKIALRSVREGRNQTLPECLKKEFRLTMNILRTTISKDMYEGIRALTIDKDNTPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*

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