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Report for Sequence Feature Glyma18g12830
Feature Type: gene_model
Chromosome: Gm18
Start: 12139486
stop: 12144834
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g12830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G59110 AT
Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr3:21855673-21857847 FORWARD LENGTH=512
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0046777 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF937 Panther
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
UniRef100_B9SKY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKY3_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N0X5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0X5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g12830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g12830
Paralog Evidence Comments
Glyma08g42170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g12830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g107600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g12830
Transcripts of Glyma18g12830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g12830.3 sequence type=transcript gene model=Glyma18g12830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTCGGAGTTCAACCCTGTTGGATTGAGGTTGACTCTCTCTCATCAACCCACTTACTTCATCTTTCTCTCTCCTCTTTTCCTCCCTTCACTTTACTTCTGTTAGCTTATTCAATACACTTTTTTGCTTCCAGCTATAAATGCTTCACCTGTTTATTACATTTTTGCTTTACCTTTACTGTTTCTCTCTCTCTTGGTTTCATCCATTGCAAACCATGCTTCCTTTCCAGCTAATTAGGTCCCTCCCTCATCCTTAAGCACAGTACCCACCAACCGTTTTTCCCCACCATTGCTTGTTTCTTCTCCAAAATCTACCCATTTTCACTCACTCTCTCTTTGCATTTTTTTTCTCTTCATAAAAATAGTATTTTTGTCTGGCACTCCAATATATCTTTGTTTATTTATTTCTTGGTATCTTAGTCTTTTTGCCTTGAGTTTATATGTGACCCACTTGAGGTCACAATCCTCTATAGTTTAACTACATACAAAAAACTGCATCTTTTTGCAGCATCTTGGTTTTGTAGGGCTTGTTCTGGTATTGTTCTGTCATTCCTGCACCCATCTATGCTCATTGGGTCTTTGGAGGTTCAGAGAGAAGACCCTCTGTTGCTTCTGTGGGTGCTGGAGATAGAGGATCAAGGAGGGTGATTTAGATCAACACAAAGAATGTTCGGATGTGTCTGTTGAAAGTTTGTGTAAAGGGACTACTTAACTATGCTCTTGCACTCAGGTGGGAATGTATTGATTCTACTCTCTGAAGAATCTGGAGATCAGCTTGTAGCATCCAACTATGTCAGCAAACAGTTCTTTGCATGTGGAATTATCGAGGAAGACTTCGTTTTTGGGATTGAGATTATGGGTTTTGATTGGGATAGGTGTTGGTGTTTTTATAGTTGTGATTCTTTGTGTATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAAAAGATCTCTGGACAAGTACTCTTTGTCACAAATACCACATGTCTCAAAGGACATCATAGTTGACATGGTTGGGGTGCAGATATCTCATGATCAATCAGAAAGTGTAGCTATTCCTGTTCATGACAAACCAAGTGAGAACAACTCGAACAAGTTGTTTTCTCATTTGCACAAGAGCAAATCTGGCGACGCCGATAATATCAGTCAGTGCAGCTCGGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTGTTAAGAAGCAGTCTGCATTGTCATTTGGAGGAATGGTAACGGCATCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCTACTAATCGCTTCTCACCAGAGAATGTGATTGGCGAGGGTGGATATGGGGTTGTTTACAGGGGAAAATTGATCAATGGATCCGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTAAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGCTAGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCGGAATATGCTAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGTTGAAGGGTTCTGAAGGCCATGAACCAGAGACAACTCAAGGGTAGGATTGACAACCATACTTGACTTGACTTAACCAGCTTGTACAATTGGCTGTTTCGATTTCCGTAACCAATCAAATACTATATATGTTCAAAGTTTGTATTGAGATTTTTTTTCCACATCCGAGAAGAGAATCAAATCTAAGAGGAGAATCAAGTTGGAGGTAGCTCATTTGGACAATGAAGCATTTTCTTTTTCAACATGGTTATTTAAGGATATGATAATGATACACGAAATTTGCAAGGAGGATGTAGTCAGGGCGAGTGCATTAGTTAATGTTGTACATACAGATGTCTGCTGAGCCAATCTCTTGCTTACATGACTGCTAATTTGCAGCCATTTTTGTCTGCTTAAGAATGGAGATGATGAAAAACTGATATTTTGGCTTCATTGTAGTTGCCGTTTTGCTTTAAGTTAATCATTATGTATAAACTCCAAAAAGTATTATGTGAAGTGACAATATCCCTTTTTCTTTTGCAGTAGTTCTGATTTTATTATGTTAGTTTCTCCACAATTTGGAAATGGTTCCATATGTCTACTATCTGTGTTCCTATCTCATTTGAAACTGTTGTACATAAAG
Coding sequences of Glyma18g12830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g12830.2 sequence type=CDS gene model=Glyma18g12830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGCAAACAGTTCTTTGCATGTGGAATTATCGAGGAAGACTTCGTTTTTGGGATTGAGATTATGGGTTTTGATTGGGATAGGTGTTGGTGTTTTTATAGTTGTGATTCTTTGTGTATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAAAAGATCTCTGGACAAGTACTCTTTGTCACAAATACCACATGTCTCAAAGGACATCATAGTTGACATGGTTGGGGTGCAGATATCTCATGATCAATCAGAAAGTGTAGCTATTCCTGTTCATGACAAACCAAGTGAGAACAACTCGAACAAGTTGTTTTCTCATTTGCACAAGAGCAAATCTGGCGACGCCGATAATATCAGTCAGTGCAGCTCGGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTGTTAAGAAGCAGTCTGCATTGTCATTTGGAGGAATGGTAACGGCATCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCTACTAATCGCTTCTCACCAGAGAATGTGATTGGCGAGGGTGGATATGGGGTTGTTTACAGGGGAAAATTGATCAATGGATCCGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTAAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGCTAGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCGGAATATGCTAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGTTGAAGGGTTCTGAAGGCCATGAACCAGAGACAACTCAAGGGTAG
>Glyma18g12830.3 sequence type=CDS gene model=Glyma18g12830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGCAAACAGTTCTTTGCATGTGGAATTATCGAGGAAGACTTCGTTTTTGGGATTGAGATTATGGGTTTTGATTGGGATAGGTGTTGGTGTTTTTATAGTTGTGATTCTTTGTGTATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAAAAGATCTCTGGACAAGTACTCTTTGTCACAAATACCACATGTCTCAAAGGACATCATAGTTGACATGGTTGGGGTGCAGATATCTCATGATCAATCAGAAAGTGTAGCTATTCCTGTTCATGACAAACCAAGTGAGAACAACTCGAACAAGTTGTTTTCTCATTTGCACAAGAGCAAATCTGGCGACGCCGATAATATCAGTCAGTGCAGCTCGGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTGTTAAGAAGCAGTCTGCATTGTCATTTGGAGGAATGGTAACGGCATCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCTACTAATCGCTTCTCACCAGAGAATGTGATTGGCGAGGGTGGATATGGGGTTGTTTACAGGGGAAAATTGATCAATGGATCCGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTAAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGCTAGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCGGAATATGCTAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGTTGAAGGGTTCTGAAGGCCATGAACCAGAGACAACTCAAGGGTAG
Predicted protein sequences of Glyma18g12830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g12830.2 sequence type=predicted peptide gene model=Glyma18g12830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSANSSLHVELSRKTSFLGLRLWVLIGIGVGVFIVVILCVLSVWVMFRRKSKRSLDKYSLSQIPHVSKDIIVDMVGVQISHDQSESVAIPVHDKPSENNSNKLFSHLHKSKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALSFGGMVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPENVIGEGGYGVVYRGKLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGKDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPSIRALKRALLVALRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKLKGSEGHEPETTQG*
>Glyma18g12830.3 sequence type=predicted peptide gene model=Glyma18g12830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSANSSLHVELSRKTSFLGLRLWVLIGIGVGVFIVVILCVLSVWVMFRRKSKRSLDKYSLSQIPHVSKDIIVDMVGVQISHDQSESVAIPVHDKPSENNSNKLFSHLHKSKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALSFGGMVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPENVIGEGGYGVVYRGKLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGKDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPSIRALKRALLVALRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKLKGSEGHEPETTQG*