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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58780 | AT | Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=248 | SoyBase | E_val: 2.00E-116 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit dehiscence | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| PF01486 | PFAM | K-box region | JGI | ISS | |
| UniRef100_Q56NI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein M8 n=1 Tax=Pisum sativum RepID=Q56NI2_PEA | SoyBase | E_val: 3.00E-158 | ISS |
| UniRef100_UPI000233E401 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E401 related cluster n=1 Tax=unknown RepID=UPI000233E401 | SoyBase | E_val: 6.00E-177 | ISS |
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Glyma18g12590 not represented in the dataset |
Glyma18g12590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g42300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g105800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g12590.2 sequence type=transcript gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGAATCAAACCCCACACTAACAAATTAAAGTCACTTTCGAAAAGACCTTTGATTATCTCCCTCTCCTTTTCCCCATACATGAAGAAATGGATGGTTTATGGAGCATGAAAGGTGAACCTCTAGTCCCTCTCTCTCTCTCATGTTTTAATTCTCCAACACGAGAGGTTAAATTTTAGAGTGAGTTGGGTAATTGTTGGAGGGTCTATTTTTCAGTCCATAAATACCTGTCTGCTAGGCCAACCCACTTCCATATTTTGCATCCTTTGTACCTGAGTTCAAGGTTAACACCAAATAACACATATAGTGCAGATTCATAAGGTATAGACTTTGTTAATTTGCACCCTCTTACCCTAAATCTTGTGTCTATTGTATTTTATCTCTTTTCATATGCTTTCAACCATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGATGATATGCTGGAAATTAGAGCTACTGGAAGTTCTGCCACAGTCATTATATATATATATATATCGGTTGATGTAGCTCTAGCTATTTGAATAGTTACGTGTAGCACCTATATAGTGCAGAGCAAATAATGCCACACATGCATGCCTGCGTTTCCTGAATCAGTTTGTGCCTTTAGAATTGACGTTAATTTGCTAAAGGTCATTATTAGACTGCGAACTTATAAATGATCCATTTTGGACTCATATTTCATACGATATATATAATGTTAATGTATCTTTTAATAAGAGCTAGTTTCTAAACCTCACACCGTGTATTTGTATTTGTCTGCATGCATCTGTTATGGCCTACTGCTATAAAATGGTTGTTGAAGGATGAACTTGGTGTAGTAGTAAAATTGAAAGAGTAAAGTTTCTCACACAACCAATTTAAGGAGGAGAAAAGAGCAGAATAAGATGAGTAACTTGATGGAGAGAGATAGAG
>Glyma18g12590.1 sequence type=CDS gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGA >Glyma18g12590.2 sequence type=CDS gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCAACCATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGA
>Glyma18g12590.1 sequence type=predicted peptide gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNILRAKIAEHERAQQQQSNMMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSSQDHTALQLV* >Glyma18g12590.2 sequence type=predicted peptide gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSTMEDPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNILRAKIAEHERAQQQQSNMMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSSQDHTALQLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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