Report for Sequence Feature Glyma18g12590
Feature Type: gene_model
Chromosome: Gm18
Start: 11747444
stop: 11756841
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g12590
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G58780 AT
Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=248
SoyBase E_val: 2.00E-116 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009886 GO-bp
Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0010047 GO-bp
Annotation by Michelle Graham. GO Biological Process: fruit dehiscence
SoyBase N/A ISS
GO:0048440 GO-bp
Annotation by Michelle Graham. GO Biological Process: carpel development
SoyBase N/A ISS
GO:0048441 GO-bp
Annotation by Michelle Graham. GO Biological Process: petal development
SoyBase N/A ISS
GO:0048443 GO-bp
Annotation by Michelle Graham. GO Biological Process: stamen development
SoyBase N/A ISS
GO:0048481 GO-bp
Annotation by Michelle Graham. GO Biological Process: ovule development
SoyBase N/A ISS
GO:0048507 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0014
KOG
MADS box transcription factor
JGI ISS
PTHR11945 Panther
MADS BOX PROTEIN
JGI ISS
PTHR11945:SF19 Panther
MADS BOX PROTEIN
JGI ISS
PF00319 PFAM
SRF-type transcription factor (DNA-binding and dimerisation domain)
JGI ISS
PF01486 PFAM
K-box region
JGI ISS
UniRef100_Q56NI2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein M8 n=1 Tax=Pisum sativum RepID=Q56NI2_PEA
SoyBase E_val: 3.00E-158 ISS
UniRef100_UPI000233E401 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E401 related cluster n=1 Tax=unknown RepID=UPI000233E401
SoyBase E_val: 6.00E-177 ISS
Expression Patterns of Glyma18g12590
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g12590
Paralog Evidence Comments
Glyma08g42300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g12590 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g105800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g12590
Transcripts of Glyma18g12590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g12590.2 sequence type=transcript gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTGAATCAAACCCCACACTAACAAATTAAAGTCACTTTCGAAAAGACCTTTGATTATCTCCCTCTCCTTTTCCCCATACATGAAGAAATGGATGGTTTATGGAGCATGAAAGGTGAACCTCTAGTCCCTCTCTCTCTCTCATGTTTTAATTCTCCAACACGAGAGGTTAAATTTTAGAGTGAGTTGGGTAATTGTTGGAGGGTCTATTTTTCAGTCCATAAATACCTGTCTGCTAGGCCAACCCACTTCCATATTTTGCATCCTTTGTACCTGAGTTCAAGGTTAACACCAAATAACACATATAGTGCAGATTCATAAGGTATAGACTTTGTTAATTTGCACCCTCTTACCCTAAATCTTGTGTCTATTGTATTTTATCTCTTTTCATATGCTTTCAACCATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGATGATATGCTGGAAATTAGAGCTACTGGAAGTTCTGCCACAGTCATTATATATATATATATATCGGTTGATGTAGCTCTAGCTATTTGAATAGTTACGTGTAGCACCTATATAGTGCAGAGCAAATAATGCCACACATGCATGCCTGCGTTTCCTGAATCAGTTTGTGCCTTTAGAATTGACGTTAATTTGCTAAAGGTCATTATTAGACTGCGAACTTATAAATGATCCATTTTGGACTCATATTTCATACGATATATATAATGTTAATGTATCTTTTAATAAGAGCTAGTTTCTAAACCTCACACCGTGTATTTGTATTTGTCTGCATGCATCTGTTATGGCCTACTGCTATAAAATGGTTGTTGAAGGATGAACTTGGTGTAGTAGTAAAATTGAAAGAGTAAAGTTTCTCACACAACCAATTTAAGGAGGAGAAAAGAGCAGAATAAGATGAGTAACTTGATGGAGAGAGATAGAG
Coding sequences of Glyma18g12590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g12590.1 sequence type=CDS gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGA
>Glyma18g12590.2 sequence type=CDS gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTTCAACCATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATATCCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGA
Predicted protein sequences of Glyma18g12590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g12590.1 sequence type=predicted peptide gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNILRAKIAEHERAQQQQSNMMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSSQDHTALQLV*
>Glyma18g12590.2 sequence type=predicted peptide gene model=Glyma18g12590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSTMEDPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNILRAKIAEHERAQQQQSNMMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSSQDHTALQLV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
