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Report for Sequence Feature Glyma18g12393

Feature Type:gene_model
Chromosome:Gm18
Start:11456864
stop:11480674
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g12393
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58750AT Annotation by Michelle Graham. TAIR10: citrate synthase 2 | chr3:21724564-21727458 REVERSE LENGTH=514 SoyBaseE_val: 0ISS
GO:0006099GO-bp Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0044262GO-bp Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004108GO-mf Annotation by Michelle Graham. GO Molecular Function: citrate (SI)-synthase activity SoyBaseN/AISS
GO:0046912GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer SoyBaseN/AISS
KOG2617 KOG Citrate synthase JGI ISS
PTHR11739Panther CITRATE SYNTHASE JGI ISS
PF00285PFAM Citrate synthase JGI ISS
UniRef100_I1KY39UniRef Annotation by Michelle Graham. Most informative UniRef hit: Citrate synthase n=1 Tax=Glycine max RepID=I1KY39_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233E3FDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E3FD related cluster n=1 Tax=unknown RepID=UPI000233E3FD SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g12393
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g12393 not represented in the dataset
Glyma18g12393 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12393
ParalogEvidenceComments
Glyma08g42400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12393 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g104400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g12393
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g12393
>Glyma18g12393.1   sequence type=CDS   gene model=Glyma18g12393   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAAAACAACAACTTCTTCTTCCGAACAAACTGCACGCAACCGTTTGGCCACCCTCGCAGCTCACTTGCTTCCCTCCGACGCCGCCTCCGCCACCGCGATCCTCCGCCCCCACCGCCTCTCCGCCCCCGCCGGATCCTCTCCGCCGGTGAACCTGAAGGGTACTGTCACCGTCGTCGACGAGAGGACCGGCAAGAAGTACCAGATCGAAGTCACCCCAGATGGCACTGTCAGAGCCTCTGACTTCAAGAAGATATCAACTGGGAAAAATGACAAGGGACTCAAACTTTATGATCCTGGCTATTTGAACACTGCTCCTGTCATCTCAAGGATTTCTTACATTGATGGTGATGCTGGAATCCTTAGATATAGAGGATATCCTATTGAGGACTTGGCAGAGAAAAGCAGCTTTATGGAAGTGTCATATCTCATAATGTATGGAAATTTGCCTTCTGAAAGTCAGTTAACAGAATGGGAGTTCACCATATCTCAGCATTCAGCTGTACCACAAGGAGTTTTGGATATGATACAATCAATGCCTCATGATGCACATCCTATGGGTATGCTTGTCAATGCCATGAGTGCTTTGTCTGTTTATCATCCTGATGCAAATCCTGCTCTCAAAGGTCTTGATATCTACAACTCAAAGCAAGTGAGAGACAAGCAAGTAGCACGGGTTATTGGAAAGATAACAACAATTGCTGCTGCAATTAATCTTAGATTGGCAGGAAGGCCACCTGTGCTTCCATCCAACAAACTTTCTTACACAGAGAACTTCCTATACATGCTAGATTCTTTTGGCAATCGATCATATAAACCTAATCCTCGGCTAACTCGAGCACTGGACATTATCTTCATCCTGCATGCAGAACATGAAATGAATTGCTCTACATCTGCTGTACGACACCTCTCATCAAGTGGTGTTGATGTATATACTGCTATTGCCGGGGCTGTTGGAGCTCTATATGGACCTCTTCATGGTGGAGCCAATGAGGCTGTCCTCAAAATGCTGAGTGAAATTGGAACTGCTGAGAACATTCCAGCGTTCATTGAAGGTGTTAAATCCAGGAAACGAAAGCTCAGTGGTTTTGGACATCGCGTGTACAAAAATTATGATCCAAGAGCAAAGGTCTTGAGGAAACTGACAGAGGAAGTGTTTACCATTGTTGGCCGGGATCCTCTTATAGAGATTGCGGTTGCCTTGGAGAAGATTGCACTGTCTGATGAGTATTTCATCAAGAGGAAGCTATATCCAAATGTTGACTTCTACTCTGGACTGATTTACAGGGCCATGGGCTTTCAACCTGAGTTTTTCACTGTTTTATTTGCCATCCCTCGAATGGCTGGGTACTTGGCACATTGGCGAGAGTCATTGGATGATCCTGATACAAAGATTATGAGACCTCAACAGGTTTATGTTGGGGAGTGGTTGAGGCATTATGCACCAATCAATCAAAGGACTACATCAAGTAACACTGACAAACTTGGTCAATTGGCTGTATCAAACGCCTCAAAGAGGCGACTTGCTGGATCTGGGGCTTAA
Predicted protein sequences of Glyma18g12393
>Glyma18g12393.1   sequence type=predicted peptide   gene model=Glyma18g12393   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKTTTSSSEQTARNRLATLAAHLLPSDAASATAILRPHRLSAPAGSSPPVNLKGTVTVVDERTGKKYQIEVTPDGTVRASDFKKISTGKNDKGLKLYDPGYLNTAPVISRISYIDGDAGILRYRGYPIEDLAEKSSFMEVSYLIMYGNLPSESQLTEWEFTISQHSAVPQGVLDMIQSMPHDAHPMGMLVNAMSALSVYHPDANPALKGLDIYNSKQVRDKQVARVIGKITTIAAAINLRLAGRPPVLPSNKLSYTENFLYMLDSFGNRSYKPNPRLTRALDIIFILHAEHEMNCSTSAVRHLSSSGVDVYTAIAGAVGALYGPLHGGANEAVLKMLSEIGTAENIPAFIEGVKSRKRKLSGFGHRVYKNYDPRAKVLRKLTEEVFTIVGRDPLIEIAVALEKIALSDEYFIKRKLYPNVDFYSGLIYRAMGFQPEFFTVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYVGEWLRHYAPINQRTTSSNTDKLGQLAVSNASKRRLAGSGA*






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