Glyma18g12330 - SoyBase

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Report for Sequence Feature Glyma18g12330

Feature Type:	gene_model
Chromosome:	Gm18
Start:	11385810
stop:	11391971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g12330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25660	AT	Annotation by Michelle Graham. TAIR10: Amidase family protein \| chr3:9339640-9342044 REVERSE LENGTH=537	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016884	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	SoyBase	N/A	ISS
GO:0050567	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	SoyBase	N/A	ISS
KOG1211	KOG	Amidases	JGI		ISS
PTHR11895	Panther	AMIDASE	JGI		ISS
PTHR11895:SF7	Panther	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A	JGI		ISS
PF01425	PFAM	Amidase	JGI		ISS
UniRef100_I1KY45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial n=1 Tax=Glycine max RepID=I1KY45_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F43A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F43A related cluster n=1 Tax=unknown RepID=UPI000233F43A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g12330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12330

Paralog	Evidence	Comments
Glyma08g42430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g104200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g12330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g12330

Limit To All Plant Sequences

>Glyma18g12330.3   sequence type=transcript   gene model=Glyma18g12330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATTCGACAAAAGAAACAAACGATATACAAAACATTAACCTATCCATCCCTTCTGTGCTTCCGCCATGACTGATAGTGGCTGGTGTTAGCTCACTTCCCACATACAAGTTCATTCCTTTATTCCCCCATTTCCCTTTCTTCTCTTTCTCAATAAAAAAAATGCTACTATCCACACTTCAAACCCCTCGCTCCCTCTCTCGCCTCACGCGCCTCCCTCACCCCCTCCCCTCCGCCGCAGTCCGAAATCCTATCCATCCGCCACGTCCTCCTCTCCCGCCGCGCCTCCGCCGCTGATCTCGTCCTCTCCCACCTCGCGCGCCTCCGCCTCACCGAGCCCCACCTCCCCGACGACGACGTCCTCCTCTCCCACGCGCGCCGCCTCGACGCCCAAATCGCCGCCGGAGAGGACCCCGGCCCCTTCGCCGGCGTGCTCGTGGGCGTCAAGGACAACATCTGCACCGCCGACATGCCGTCGACGGCCGGGTCGCGCATCCTGGAGGGGTACAGGGCGCCGTTCGACGCCACCGCGGTGAAGAGAGTGAGGGAGTTGGGAGGGGTTGTTGTTGGGAAAACCAATATGGATGAGTTTGGAATGGGTAGCACCACTGAAGCTTCTGCATTTCAGGTGACTGCCAACCCATGGGATGAGTCTAGGGTGCCAGGAGGATCATCAGGTGGATCAGCAGCTGCAGTTTCTGCCAGACAGTTTGTTGTATCATTGGGAAGTGACACTGGTGGAAGTGTGAGGCAGCCAGCATCTTTTTGTGGTGTTGTAGGTTTGAAGCCAACATATGGGCGTGTCTCAAGATTTGGACTTATGGCGTATGCATCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTTGCTGATACTGGGATTCTCCTTCATGCAATTGCTGGCCATGATAGATTTGATGCCACCTCAAGTAAGCAGGATGTACCCGACTTTCAATCTCATTTTCACTCTGTGAGCTCCTTGGAAAGTAAGCCCTTGAAGGGACTGAGAGTTGGTCTGATCTGTGAAACTATTGATGATGGCATTGATGCTGGAGTAATTTCTGCAATTCGTGCTGCTGCTTTGCATTTTGAGGAATTAGGATGCTCTGTGAATGAGGTATCACTGCCATCGTTTTCCCTTGGGTTGCCAGCCTATTATATTCTTGCTGTGTCTGAATCATCTTCCAACTTGTCACGCTATGATGGTATCAGATATGGAAACCAAGTTTATGCTGATGAGCTAGATTCTCTTTATGGAGGTTCCCGAGCTAAAGGGTTTGGTTCTGAGGTCAAAATGAGAATTTTGATGGGAACATATTCTCTTTCAGCTGGTTACTATGATGCGTATTACAAACGTGCACAGCAGGTAAGGACCATAATTAGGAATAGCTTTAAGGAGGCACTCAATCAAAATGACATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATAGTCCTTTGGCTATGTATGCAGGCGACATCATGACTGTAAATGTTAATCTAGCCGGACTTCCTGCCTAGGTTTTGCCATGTGGATTTGTTGAAGGTGGGCATGCAGGCCTTCCTGTTGGTCTGCAAATGATTGGTGCAGCATTTAATGAGGGAGAGCTGCTGAGAGTGGGACACATCTTTGAGCAAACTCTTGAAAATTGCAGATTTGTTCCACCAATTGTAGCTGATGATATTGCATACTAAGTATTTTTCAGCACAGGTTATACTTCTCCAAATTTTGTAGTCACACTACTGAAAGAGAGTTGGGTGAGAAAAGTTCACTATTTGAAATTGAGTATGTTCATAACAAACCTTCAAGTAGCTTTTTGATGAGGGGGTCATGTGCTATGGGGAGCAATTGTATGAATAATTAATGTGTTTATTCAGTGTAGAACTAGGTACTCGAAACTTTTGAATACGGATTTTCTAATTTTTTTTATATCTGCTTGGATACAAGGCTTTAATCAGTATGCTGGTTACATTGAAATATGCATGTTAGTAGCCACATAATACTTTAATTTGTCATCTCCTAATGTTGTAGTTAAAAAAAGGGGACCTTATTGTTACAATTTGTGTTGCGACTTATCAGACTTTTTGTGTATGTGAACAGGAACGAGAACAATGCAAATTAACATAAATTTCACCCACTTAATGTTGGATG

Coding sequences of Glyma18g12330

Limit To All Plant Sequences

>Glyma18g12330.2   sequence type=CDS   gene model=Glyma18g12330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACTATCCACACTTCAAACCCCTCGCTCCCTCTCTCGCCTCACGCGCCTCCCTCACCCCCTCCCCTCCGCCGCACCCCACCTCCCCGACGACGACGTCCTCCTCTCCCACGCGCGCCGCCTCGACGCCCAAATCGCCGCCGGAGAGGACCCCGGCCCCTTCGCCGGCGTGCTCGTGGGCGTCAAGGACAACATCTGCACCGCCGACATGCCGTCGACGGCCGGGTCGCGCATCCTGGAGGGGTACAGGGCGCCGTTCGACGCCACCGCGGTGAAGAGAGTGAGGGAGTTGGGAGGGGTTGTTGTTGGGAAAACCAATATGGATGAGTTTGGAATGGGTAGCACCACTGAAGCTTCTGCATTTCAGGTGACTGCCAACCCATGGGATGAGTCTAGGGTGCCAGGAGGATCATCAGGTGGATCAGCAGCTGCAGTTTCTGCCAGACAGTTTGTTGTATCATTGGGAAGTGACACTGGTGGAAGTGTGAGGCAGCCAGCATCTTTTTGTGGTGTTGTAGGTTTGAAGCCAACATATGGGCGTGTCTCAAGATTTGGACTTATGGCGTATGCATCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTTGCTGATACTGGGATTCTCCTTCATGCAATTGCTGGCCATGATAGATTTGATGCCACCTCAAGTAAGCAGGATGTACCCGACTTTCAATCTCATTTTCACTCTGTGAGCTCCTTGGAAAGTAAGCCCTTGAAGGGACTGAGAGTTGGTCTGATCTGTGAAACTATTGATGATGGCATTGATGCTGGAGTAATTTCTGCAATTCGTGCTGCTGCTTTGCATTTTGAGGAATTAGGATGCTCTGTGAATGAGGTATCACTGCCATCGTTTTCCCTTGGGTTGCCAGCCTATTATATTCTTGCTGTGTCTGAATCATCTTCCAACTTGTCACGCTATGATGGTATCAGATATGGAAACCAAGTTTATGCTGATGAGCTAGATTCTCTTTATGGAGGTTCCCGAGCTAAAGGGTTTGGTTCTGAGGTCAAAATGAGAATTTTGATGGGAACATATTCTCTTTCAGCTGGTTACTATGATGCGTATTACAAACGTGCACAGCAGGTAAGGACCATAATTAGGAATAGCTTTAAGGAGGCACTCAATCAAAATGACATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATAGTCCTTTGGCTATGTATGCAGGCGACATCATGACTGTAAATGTTAATCTAGCCGGACTTCCTGCCTAG

>Glyma18g12330.3   sequence type=CDS   gene model=Glyma18g12330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGACGGCCGGGTCGCGCATCCTGGAGGGGTACAGGGCGCCGTTCGACGCCACCGCGGTGAAGAGAGTGAGGGAGTTGGGAGGGGTTGTTGTTGGGAAAACCAATATGGATGAGTTTGGAATGGGTAGCACCACTGAAGCTTCTGCATTTCAGGTGACTGCCAACCCATGGGATGAGTCTAGGGTGCCAGGAGGATCATCAGGTGGATCAGCAGCTGCAGTTTCTGCCAGACAGTTTGTTGTATCATTGGGAAGTGACACTGGTGGAAGTGTGAGGCAGCCAGCATCTTTTTGTGGTGTTGTAGGTTTGAAGCCAACATATGGGCGTGTCTCAAGATTTGGACTTATGGCGTATGCATCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTTGCTGATACTGGGATTCTCCTTCATGCAATTGCTGGCCATGATAGATTTGATGCCACCTCAAGTAAGCAGGATGTACCCGACTTTCAATCTCATTTTCACTCTGTGAGCTCCTTGGAAAGTAAGCCCTTGAAGGGACTGAGAGTTGGTCTGATCTGTGAAACTATTGATGATGGCATTGATGCTGGAGTAATTTCTGCAATTCGTGCTGCTGCTTTGCATTTTGAGGAATTAGGATGCTCTGTGAATGAGGTATCACTGCCATCGTTTTCCCTTGGGTTGCCAGCCTATTATATTCTTGCTGTGTCTGAATCATCTTCCAACTTGTCACGCTATGATGGTATCAGATATGGAAACCAAGTTTATGCTGATGAGCTAGATTCTCTTTATGGAGGTTCCCGAGCTAAAGGGTTTGGTTCTGAGGTCAAAATGAGAATTTTGATGGGAACATATTCTCTTTCAGCTGGTTACTATGATGCGTATTACAAACGTGCACAGCAGGTAAGGACCATAATTAGGAATAGCTTTAAGGAGGCACTCAATCAAAATGACATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATAGTCCTTTGGCTATGTATGCAGGCGACATCATGACTGTAAATGTTAATCTAGCCGGACTTCCTGCCTAG

Predicted protein sequences of Glyma18g12330

Limit To All Plant Sequences

>Glyma18g12330.2   sequence type=predicted peptide   gene model=Glyma18g12330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSTLQTPRSLSRLTRLPHPLPSAAPHLPDDDVLLSHARRLDAQIAAGEDPGPFAGVLVGVKDNICTADMPSTAGSRILEGYRAPFDATAVKRVRELGGVVVGKTNMDEFGMGSTTEASAFQVTANPWDESRVPGGSSGGSAAAVSARQFVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADTGILLHAIAGHDRFDATSSKQDVPDFQSHFHSVSSLESKPLKGLRVGLICETIDDGIDAGVISAIRAAALHFEELGCSVNEVSLPSFSLGLPAYYILAVSESSSNLSRYDGIRYGNQVYADELDSLYGGSRAKGFGSEVKMRILMGTYSLSAGYYDAYYKRAQQVRTIIRNSFKEALNQNDILISPAAPSAAYKIGEKKNSPLAMYAGDIMTVNVNLAGLPA*

>Glyma18g12330.3   sequence type=predicted peptide   gene model=Glyma18g12330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSTAGSRILEGYRAPFDATAVKRVRELGGVVVGKTNMDEFGMGSTTEASAFQVTANPWDESRVPGGSSGGSAAAVSARQFVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADTGILLHAIAGHDRFDATSSKQDVPDFQSHFHSVSSLESKPLKGLRVGLICETIDDGIDAGVISAIRAAALHFEELGCSVNEVSLPSFSLGLPAYYILAVSESSSNLSRYDGIRYGNQVYADELDSLYGGSRAKGFGSEVKMRILMGTYSLSAGYYDAYYKRAQQVRTIIRNSFKEALNQNDILISPAAPSAAYKIGEKKNSPLAMYAGDIMTVNVNLAGLPA*

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