Glyma18g12250 - SoyBase

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Report for Sequence Feature Glyma18g12250

Feature Type:	gene_model
Chromosome:	Gm18
Start:	11302499
stop:	11322622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g12250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31300	AT	Annotation by Michelle Graham. TAIR10: actin-related protein C1B \| chr2:13346313-13349787 REVERSE LENGTH=378	SoyBase	E_val: 0	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0030833	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0005885	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
KOG1523	KOG	Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC	JGI		ISS
PTHR10709	Panther	ARP2/3 COMPLEX SUBUNIT 41-RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9SIS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SIS1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E2AC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2AC related cluster n=1 Tax=unknown RepID=UPI000233E2AC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g12250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12250

Paralog	Evidence	Comments
Glyma08g42471	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g103800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g12250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g12250

Limit To All Plant Sequences

>Glyma18g12250.1   sequence type=CDS   gene model=Glyma18g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGATGGCCGTTCACCAATTCGCGCAATGCATCACTTGCCACGCTTGGAGCCCCGATCAATCCATGGTGGCTTTATGTCCAAACAATAATGAAGTGCACATCTATAGGTTGGTTGAAGACAAATGGGAAAAGGTGCATGTTCTTCAAAAGCATGACCAGGTAATTTCTGGGATAGACTGGAGCACAAGATCAAATAGAATAGTTACTGCATCCCATGATCGGAATTCATATGTCTGGAACCTTGAAGGATCAGAATGGGTGCCTACTCTTGTTATCCTTAGACTAAACCGTGCTGCTCTTTGTGTTCAATGGAGTCCAAAAGAAAACAAATTTGCAGTGGGAAGTGGAGCCAAAACTGTTTGTATATGCTACTATGAGCAGGAAAACAACTGGTGGGTCAGCAAACTTATCAGGAAAAGACATGATTCTTCCGTGACAAGTGTTTCTTGGCATCCCGATAATATTCTTCTTGCTACAACATCCACAGATGGGAAATGCCGAGTATTCTCCACCTTGATAAAAGGCGTTGATGCAAAGGATTCAAAAAAGGGTACTTCATCAGATTCAAAATTTGGAGAGCTGATTGTTCAGCTTGATCTCTCATCATCTTGGACATTCGGAGTCAAGTGGTCACCAAGTGGTAATACTCTAGCATATGCAGGTCATAATTCTATGATATATTTTGTTGATGATGTTGGTCCTTCTCCTTTGGCCCAAAACGTTGTGTTCCGTGATTTGCCGCTCCGTGATGTATTATTTGTTTCCGAGAGAAAAGTGATAGGTGTGGGATTTGACTGTAACCCAATGGTTTTTGCCGCAGATGAAAGGGGAATTTGGAGTTTTGTAAGATATTTGGGAGAACGAAAAGCAGCATCTTCTGGACCAAGATATGGCTCACAGTTCTCTGAAGCATTTGGAAAGTTTTATGGCCAATCAAAGCATGGAGTGAGCAATGATGCAGTTGAAACTTCTAGAGCTCGTGGAACTGTTCATGAAAACTGTATAAATTGTATTATGCCTCTTGGGGATCATGGCACGTTGATAAGGCGTTTCAGCACATCAGGATTGGATGGAAGAATTGTTGTATGGGATTTGGAAAATGAGCAAGACCTGTTGGAATTATAA

Predicted protein sequences of Glyma18g12250

Limit To All Plant Sequences

>Glyma18g12250.1   sequence type=predicted peptide   gene model=Glyma18g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVISGIDWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTLIKGVDAKDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYAGHNSMIYFVDDVGPSPLAQNVVFRDLPLRDVLFVSERKVIGVGFDCNPMVFAADERGIWSFVRYLGERKAASSGPRYGSQFSEAFGKFYGQSKHGVSNDAVETSRARGTVHENCINCIMPLGDHGTLIRRFSTSGLDGRIVVWDLENEQDLLEL*

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