Glyma18g12120 - SoyBase

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Report for Sequence Feature Glyma18g12120

Feature Type:	gene_model
Chromosome:	Gm18
Start:	10997537
stop:	10997927
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g12120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76750	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1278) \| chr1:28811107-28811583 FORWARD LENGTH=158	SoyBase	E_val: 3.00E-21	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0048240	GO-bp	Annotation by Michelle Graham. GO Biological Process: sperm capacitation	SoyBase	N/A	ISS
GO:0080155	GO-bp	Annotation by Michelle Graham. GO Biological Process: Regulation of double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:2000008	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization to cell surface	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0031982	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vesicle	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06915	PFAM	Protein of unknown function (DUF1278)	JGI		ISS
UniRef100_G7JAV4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ECA1 protein n=1 Tax=Medicago truncatula RepID=G7JAV4_MEDTR	SoyBase	E_val: 5.00E-16	ISS
UniRef100_I1N0T9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0T9_SOYBN	SoyBase	E_val: 4.00E-68	ISS

Expression Patterns of Glyma18g12120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g12120 not represented in the dataset	Glyma18g12120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g12120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g103100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g12120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g12120

Limit To All Plant Sequences

>Glyma18g12120.1   sequence type=CDS   gene model=Glyma18g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCTTACGACCCCGTTATTCTTGTTACTCTGGTGATTACTGCATTGGTTTCACATGCACGTGTGGTTGAGTCCAGATCACTCTCCAACCTATCTACCACCCTGAGCCTTGCTCTGCAAGCATGTAGTGGTGAAATCGTAACGTTTGTTCTCAATGGTGAAACTTACCTAGGGCAAGGTTGCCGCCAAGCTATTAGGGTTATTGGACATGATTGCTGGCATAACATCGTTGCTTCTCTTGGGTTCACCACTGAAGAGACTGATATATTGGAGGGATATTGTGATGAGATTGTTCATTCACCTCCACCGCCATTGGTAGAGCCTTAA

Predicted protein sequences of Glyma18g12120

Limit To All Plant Sequences

>Glyma18g12120.1   sequence type=predicted peptide   gene model=Glyma18g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSYDPVILVTLVITALVSHARVVESRSLSNLSTTLSLALQACSGEIVTFVLNGETYLGQGCRQAIRVIGHDCWHNIVASLGFTTEETDILEGYCDEIVHSPPPPLVEP*

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