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Report for Sequence Feature Glyma18g12100

Feature Type:gene_model
Chromosome:Gm18
Start:10914398
stop:10923083
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20550AT Annotation by Michelle Graham. TAIR10: SMAD/FHA domain-containing protein | chr3:7174695-7177600 REVERSE LENGTH=314 SoyBaseE_val: 5.00E-104ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0048638GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of developmental growth SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1882 KOG Transcriptional regulator SNIP1, contains FHA domain JGI ISS
PTHR23308Panther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 JGI ISS
PTHR23308:SF8Panther SUBFAMILY NOT NAMED JGI ISS
PF00498PFAM FHA domain JGI ISS
UniRef100_G7J1A2UniRef Annotation by Michelle Graham. Most informative UniRef hit: FHA domain-containing protein DDL n=1 Tax=Medicago truncatula RepID=G7J1A2_MEDTR SoyBaseE_val: 2.00E-147ISS
UniRef100_UPI000233F433UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F433 related cluster n=1 Tax=unknown RepID=UPI000233F433 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g102900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g12100.3   sequence type=transcript   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGATTGAAGGAAAAAATTCTCACGAGATTGATAAACCCAAAACCACCAAATTCTGAACTCACCACACAATAGAGAATCTGAATCAATCGCGATCACAGAGCGTATAAGCAGTAACAAACAATGCACAATGCTTAACATTGTGATGTTAGTAACTTAACCACAGTTCTGGAACATTCAATTATTCTGATACAGCACCTCCACCGTTACTACCATGGGCCGTCACTCCAGTAACCATTCTCCCTCCTCACGCCGCCACCGCAGTAGTATCTCTCCGCCGCCGCGAGACAAGCACGAGTATTCCGGCCGCAGTACAGCCAAACCGGTTCGGCCCGGTTCGCCGGATTCTCCCCCTTGTTCGCGCTCTCCGTCTCCGCGAACCAAGCGGTTGAAGAAAGCTCAATCCGAACGCGAGCGTGAGCCTCGCGAGAGCGAGAGGAACCATGGCGGTAGCAGAGGGAGAGGTTCGGAGAGGGGCGCCGGTGAGCGGAGGGAGAAGAAGAGAACGGAGAATGATGAGGGTAACGGAAGGAGTAACAAATCGGGGAAGAGAATGGAGTACGAAGACAGTGGCGGAAGGAGTAGCAAATCGGAGAAGGGAACAGAGAACGAAGACGGTGGCGGAAGGAGTAACAAGTCGTCGCGGTCGAGGCAAGAGAGGTCGCCGGAGCGTGACCGCAATGGGAGGAGCCGGCATAGGTCAGAGTCTCCGCCACGTCACCACGCTTCCGCCGCGGATGCAAAACCTCGTGATGAGATGATAAACTCAAGAGGAGCTGAACAAATGGATGATGAGGATGAGTCTATTAGGAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGAAAAACAGAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCATCTGAAACAAATCGAGTTAGAGGTGTTACTTTGTTATTCAATGAACCCGCAGAGGCTCGCAAACCAGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGAGCCCCTTTATATACATCGCCAAAGTTGTTATCTTTTTGGAAGGGAAAGAAGGGTTGCTGATATCCCTACAGATCATCCATCTTGCAGCAAGCAACATGCTGTTATTCAATTCCGGCAAGTCGAAAAGGAGCAACCTGATGGTACCTTATTAAAGCAAGCCATACATTATGGACCTTGGAAGCACAAACAAAACTTTCATAAATGATGGTCCCATTGAACCTCAACGATATTACGAACTTAGGGAAAAGGACACCATTAAATTTGGTAACAGTAGTCGAGAATATGTATTACTACATGAGAATTCTATTGGGCAATAGACATTAGTCTCCAATTTCGCTCTATCTACTCATCAATACTGATTAAAGCAGCATTTGACCTGCAGTTTTTTGTAATTCATGTCCAACTTATGTGTATTCCCTCCTTTCAGAAGTTTCTAGATCAGTTTGTCAGCAAGTTTCTTGTTATTATTATATATACAAGACACGTTGGACAATTTATCTTTAAGTTGTATAATTCAAACTTGAGCCCTCAACTTAAGCAAAGTTCGCTGTTGTAAACTGATAAATTTGCCTTAAGAATTTAACTGCTTGGTTGGAACATTTGCTTGTTAGTTTCCGACAGGTTCAACATTTTCATATAGCATTGTGTTATCTTCCTTAGGTAGTCTGCTGGAGAAATTATTTGGTTGTTCCGGATCACTACTACTTGTATATGGTTTAGATCAATAATTATGTGACATGAATTTATGTTTTTAAATTTAAGAAAAAACCATTAATAATACTTGATTACAT

>Glyma18g12100.4   sequence type=transcript   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGATTGAAGGAAAAAATTCTCACGAGATTGATAAACCCAAAACCACCAAATTCTGAACTCACCACACAATAGAGAATCTGAATCAATCGCGATCACAGAGCGTATAAGCAGTAACAAACAATGCACAATGCTTAACATTGTGATGTTAGTAACTTAACCACAGTTCTGGAACATTCAATTATTCTGATACAGCACCTCCACCGTTACTACCATGGGCCGTCACTCCAGTAACCATTCTCCCTCCTCACGCCGCCACCGCAGTAGTATCTCTCCGCCGCCGCGAGACAAGCACGAGTATTCCGGCCGCAGTACAGCCAAACCGGTTCGGCCCGGTTCGCCGGATTCTCCCCCTTGTTCGCGCTCTCCGTCTCCGCGAACCAAGCGGTTGAAGAAAGCTCAATCCGAACGCGAGCGTGAGCCTCGCGAGAGCGAGAGGAACCATGGCGGTAGCAGAGGGAGAGGTTCGGAGAGGGGCGCCGGTGAGCGGAGGGAGAAGAAGAGAACGGAGAATGATGAGGGTAACGGAAGGAGTAACAAATCGGGGAAGAGAATGGAGTACGAAGACAGTGGCGGAAGGAGTAGCAAATCGGAGAAGGGAACAGAGAACGAAGACGGTGGCGGAAGGAGTAACAAGTCGTCGCGGTCGAGGCAAGAGAGGTCGCCGGAGCGTGACCGCAATGGGAGGAGCCGGCATAGGTCAGAGTCTCCGCCACGTCACCACGCTTCCGCCGCGGATGCAAAACCTCGTGATGAGATGATAAACTCAAGAGGAGCTGAACAAATGGATGATGAGGATGAGTCTATTAGGAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGAAAAACAGAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCATCTGAAACAAATCGAGTTAGAGGTGTTACTTTGTTATTCAATGAACCCGCAGAGGCTCGCAAACCAGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGTCAAATTATTAAGGCTATGTTCAGCAAGGCTTTTCAGTTAACTTCTAGCTTTTTTCAGTAGCTGAAAAACCTGTTTGACTGTTTGGTAAACAAGTTTTTTTTAGTCAAAGGGCGGTTATGGCGGTATGGCATGGCGGATTTTTGAAAAAACGCCACCAAATAGCGGTGGCGTTGCGGGTTTCAAATGGCGGCCGCCATAGGCTTAACAGTGGTGGCGATTATGGCAAAAGAAACTTTTTTTTTTTGAAAATTTTCCCAAAATGAGATTGGGTTGTCTTGGGCTGACCTGACCCAACCCTAAACCCGGTTTTCGAATCAAAATGGGATGAGCAGCACGCAGCATGTGAACTCCCGAACTCCAGCGCGAGCACCACGCGAACTCCAGCACGCACCAGCGCGAGCAGCACGCAGCACCCAGTATGAACCAGCGATGATGGCACCACGCACGCGAGCAACGGACGGCGACGGCGGCAGCAATGACTACAGACTGCGGCGGCACCTGGTTCTGTTTTTTTTTTTGGTTCAGTTTTTTTTTTCTGTTTGACACTCTTTTTTAATTTTTGGTTCTGCTTTTTTTTTTTTTTCTATTCAGTCCTCTTCTACTAATTACAACGAAGAGGATTATGTTGGGATTGGAGAAGATGATTAGAGCCTCAACCTTTACTTTGCACTTTGCATTATGCTTTTATCCTTTTGTTATTTTGAACTCTTGAATGAGTTTATTTGGTGTTGGTTATTGTGTGAACTCATGAAACTTTTTTAGTTTATTTGAATGCAATCCATTGTTTTTT

>Glyma18g12100.2   sequence type=CDS   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCGTCACTCCAGTAACCATTCTCCCTCCTCACGCCGCCACCGCAGTAGTATCTCTCCGCCGCCGCGAGACAAGCACGAGTATTCCGGCCGCAGTACAGCCAAACCGGTTCGGCCCGGTTCGCCGGATTCTCCCCCTTGTTCGCGCTCTCCGTCTCCGCGAACCAAGCGGTTGAAGAAAGCTCAATCCGAACGCGAGCGTGAGCCTCGCGAGAGCGAGAGGAACCATGGCGGTAGCAGAGGGAGAGGTTCGGAGAGGGGCGCCGGTGAGCGGAGGGAGAAGAAGAGAACGGAGAATGATGAGGGTAACGGAAGGAGTAACAAATCGGGGAAGAGAATGGAGTACGAAGACAGTGGCGGAAGGAGTAGCAAATCGGAGAAGGGAACAGAGAACGAAGACGGTGGCGGAAGGAGTAACAAGTCGTCGCGGTCGAGGCAAGAGAGGTCGCCGGAGCGTGACCGCAATGGGAGGAGCCGGCATAGGTCAGAGTCTCCGCCACGTCACCACGCTTCCGCCGCGGATGCAAAACCTCGTGATGAGATGATAAACTCAAGAGGAGCTGAACAAATGGATGATGAGGATGAGTCTATTAGGAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGAAAAACAGAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCATCTGAAACAAATCGAGTTAGAGGTGTTACTTTGTTATTCAATGAACCCGCAGAGGCTCGCAAACCAGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGAGCCCCTTTATATACATCGCCAAAGTTGTTATCTTTTTGGAAGGGAAAGAAGGGTTGCTGATATCCCTACAGATCATCCATCTTGCAGCAAGCAACATGCTGTTATTCAATTCCGGCAAGTCGAAAAGGAGCAACCTGATGGTACCTTATTAAAGCAAGTAAGGCCATACATTATGGACCTTGGAAGCACAAACAAAACTTTCATAAATGATGGTCCCATTGAACCTCAACGATATTACGAACTTAGGGAAAAGGACACCATTAAATTTGGTAACAGTAGTCGAGAATATGTATTACTACATGAGAATTCTATTGGGCAATAG

>Glyma18g12100.3   sequence type=CDS   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCGTCACTCCAGTAACCATTCTCCCTCCTCACGCCGCCACCGCAGTAGTATCTCTCCGCCGCCGCGAGACAAGCACGAGTATTCCGGCCGCAGTACAGCCAAACCGGTTCGGCCCGGTTCGCCGGATTCTCCCCCTTGTTCGCGCTCTCCGTCTCCGCGAACCAAGCGGTTGAAGAAAGCTCAATCCGAACGCGAGCGTGAGCCTCGCGAGAGCGAGAGGAACCATGGCGGTAGCAGAGGGAGAGGTTCGGAGAGGGGCGCCGGTGAGCGGAGGGAGAAGAAGAGAACGGAGAATGATGAGGGTAACGGAAGGAGTAACAAATCGGGGAAGAGAATGGAGTACGAAGACAGTGGCGGAAGGAGTAGCAAATCGGAGAAGGGAACAGAGAACGAAGACGGTGGCGGAAGGAGTAACAAGTCGTCGCGGTCGAGGCAAGAGAGGTCGCCGGAGCGTGACCGCAATGGGAGGAGCCGGCATAGGTCAGAGTCTCCGCCACGTCACCACGCTTCCGCCGCGGATGCAAAACCTCGTGATGAGATGATAAACTCAAGAGGAGCTGAACAAATGGATGATGAGGATGAGTCTATTAGGAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGAAAAACAGAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCATCTGAAACAAATCGAGTTAGAGGTGTTACTTTGTTATTCAATGAACCCGCAGAGGCTCGCAAACCAGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGAGCCCCTTTATATACATCGCCAAAGTTGTTATCTTTTTGGAAGGGAAAGAAGGGTTGCTGATATCCCTACAGATCATCCATCTTGCAGCAAGCAACATGCTGTTATTCAATTCCGGCAAGTCGAAAAGGAGCAACCTGATGGTACCTTATTAAAGCAAGCCATACATTATGGACCTTGGAAGCACAAACAAAACTTTCATAAATGA

>Glyma18g12100.4   sequence type=CDS   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCGTCACTCCAGTAACCATTCTCCCTCCTCACGCCGCCACCGCAGTAGTATCTCTCCGCCGCCGCGAGACAAGCACGAGTATTCCGGCCGCAGTACAGCCAAACCGGTTCGGCCCGGTTCGCCGGATTCTCCCCCTTGTTCGCGCTCTCCGTCTCCGCGAACCAAGCGGTTGAAGAAAGCTCAATCCGAACGCGAGCGTGAGCCTCGCGAGAGCGAGAGGAACCATGGCGGTAGCAGAGGGAGAGGTTCGGAGAGGGGCGCCGGTGAGCGGAGGGAGAAGAAGAGAACGGAGAATGATGAGGGTAACGGAAGGAGTAACAAATCGGGGAAGAGAATGGAGTACGAAGACAGTGGCGGAAGGAGTAGCAAATCGGAGAAGGGAACAGAGAACGAAGACGGTGGCGGAAGGAGTAACAAGTCGTCGCGGTCGAGGCAAGAGAGGTCGCCGGAGCGTGACCGCAATGGGAGGAGCCGGCATAGGTCAGAGTCTCCGCCACGTCACCACGCTTCCGCCGCGGATGCAAAACCTCGTGATGAGATGATAAACTCAAGAGGAGCTGAACAAATGGATGATGAGGATGAGTCTATTAGGAAGATGAAGGCTGCTGAGGAGGCTTTGGAAGAAAAACAGAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCATCTGAAACAAATCGAGTTAGAGGTGTTACTTTGTTATTCAATGAACCCGCAGAGGCTCGCAAACCAGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGTCAAATTATTAAGGCTATGTTCAGCAAGGCTTTTCAGTTAA

>Glyma18g12100.2   sequence type=predicted peptide   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRHSSNHSPSSRRHRSSISPPPRDKHEYSGRSTAKPVRPGSPDSPPCSRSPSPRTKRLKKAQSEREREPRESERNHGGSRGRGSERGAGERREKKRTENDEGNGRSNKSGKRMEYEDSGGRSSKSEKGTENEDGGGRSNKSSRSRQERSPERDRNGRSRHRSESPPRHHASAADAKPRDEMINSRGAEQMDDEDESIRKMKAAEEALEEKQKQKPSFELSGKLASETNRVRGVTLLFNEPAEARKPDIKWRLYVFKAGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGTLLKQVRPYIMDLGSTNKTFINDGPIEPQRYYELREKDTIKFGNSSREYVLLHENSIGQ*

>Glyma18g12100.3   sequence type=predicted peptide   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRHSSNHSPSSRRHRSSISPPPRDKHEYSGRSTAKPVRPGSPDSPPCSRSPSPRTKRLKKAQSEREREPRESERNHGGSRGRGSERGAGERREKKRTENDEGNGRSNKSGKRMEYEDSGGRSSKSEKGTENEDGGGRSNKSSRSRQERSPERDRNGRSRHRSESPPRHHASAADAKPRDEMINSRGAEQMDDEDESIRKMKAAEEALEEKQKQKPSFELSGKLASETNRVRGVTLLFNEPAEARKPDIKWRLYVFKAGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGTLLKQAIHYGPWKHKQNFHK*

>Glyma18g12100.4   sequence type=predicted peptide   gene model=Glyma18g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRHSSNHSPSSRRHRSSISPPPRDKHEYSGRSTAKPVRPGSPDSPPCSRSPSPRTKRLKKAQSEREREPRESERNHGGSRGRGSERGAGERREKKRTENDEGNGRSNKSGKRMEYEDSGGRSSKSEKGTENEDGGGRSNKSSRSRQERSPERDRNGRSRHRSESPPRHHASAADAKPRDEMINSRGAEQMDDEDESIRKMKAAEEALEEKQKQKPSFELSGKLASETNRVRGVTLLFNEPAEARKPDIKWRLYVFKAGEVLNVKLLRLCSARLFS*







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