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Report for Sequence Feature Glyma18g12080

Feature Type:gene_model
Chromosome:Gm18
Start:10897613
stop:10902560
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g12080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54800AT Annotation by Michelle Graham. TAIR10: glucose 6-phosphate/phosphate translocator 1 | chr5:22261408-22263562 FORWARD LENGTH=388 SoyBaseE_val: 0ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006863GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0015713GO-bp Annotation by Michelle Graham. GO Biological Process: phosphoglycerate transport SoyBaseN/AISS
GO:0015714GO-bp Annotation by Michelle Graham. GO Biological Process: phosphoenolpyruvate transport SoyBaseN/AISS
GO:0015760GO-bp Annotation by Michelle Graham. GO Biological Process: glucose-6-phosphate transport SoyBaseN/AISS
GO:0034389GO-bp Annotation by Michelle Graham. GO Biological Process: lipid particle organization SoyBaseN/AISS
GO:0035436GO-bp Annotation by Michelle Graham. GO Biological Process: triose phosphate transmembrane transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005315GO-mf Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity SoyBaseN/AISS
GO:0015120GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate transmembrane transporter activity SoyBaseN/AISS
GO:0015152GO-mf Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
GO:0071917GO-mf Annotation by Michelle Graham. GO Molecular Function: triose-phosphate transmembrane transporter activity SoyBaseN/AISS
KOG1441 KOG Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter JGI ISS
PTHR11132Panther SOLUTE CARRIER FAMILY 35 JGI ISS
PF00892PFAM EamA-like transporter family JGI ISS
PF03151PFAM Triose-phosphate Transporter family JGI ISS
UniRef100_A3RLB0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plastid phosphate translocator n=2 Tax=Fabeae RepID=A3RLB0_VICNA SoyBaseE_val: 0ISS
UniRef100_UPI000233E2A7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E2A7 related cluster n=1 Tax=unknown RepID=UPI000233E2A7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g12080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g12080 not represented in the dataset
Glyma18g12080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g12080
ParalogEvidenceComments
Glyma02g25290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g12080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g102700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g12080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g12080
>Glyma18g12080.2   sequence type=transcript   gene model=Glyma18g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAATATGATGTAATAAAAGAGAGAAATAAAAGGGTTTTTAACGAGATGTTTAAATTAGAAGTAAAAAAAAAAAAACAATGTTTAAATTTATAGGATGTGTCATTATTCTCTTTCATTTTGGACTGAGTTTTCAAAGGTCTTACTTTGTATCTTTCGTTTCTTGATATTCAATGCCGTCATCAAACCCAAACCCGAGAGAGAGGAAGTAACAACACTGACCCTCACCGTCACGTATCCGCCACCAAACCCCACAAACACAGTATTCCCATCTTGTTTTTATTATTTATACGGTAAACAAAACACAACACACCAAACATCATTCGACCATACACATTGCTGTTCACCATTTTCAATTTTCTAAGTGGTTTGGCTTGGTTTGACATACATAAACCTTTCAAGATCTCAGAGGGGCAGAAGATCAAAGCCAAGACATCCTCTCGTATATAAAGAGTGTCTCTGATTTGATCTTTGTTTCTTCTCTTTCTCTCGTTTGAGATTTTTCAGTACTCCACCAAGGTTTTGTCAGAAAAGCTTGAATTTTTCGCCTACCCTTTACAATGATCTCTTCGTTGAGACAGCCTGTTGTAGGGATCAGTGGTTCTGATCTTCTTTTGAGGCAAAGACATGCAACTCCAATTAAGGCAAGGTCGTTTTTACCCTCTTTGTCAAGAGAAAAGGGTCAAGGATCTCTTGTTTCAGTTCAAAAGCCACTCCACATTGGTGCTTCTCTTGGTGTTGGAAATTTTGTGTCAGTGAAGAGTGATGCTAAAAGGGGTGATTTGGTGAAGTGTGAGGCCTATGAGGCAGACAGATCAGAGGTTGAGGGTGCAAGCACACCGTCAGAGGCTGCAAAGAAGGTAAAAATTGGGATATATTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTCAATATTTATAACAAGAAGGTTCTGAATGCCTACCCTTACCCTTGGCTTACTTCAACTCTCTCACTTGCATGTGGGTCTCTTATGATGTTGATCTCTTGGGCCACTGGGATTGCAGAAGCCCCCAAGACTGATCCTGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCACATACAATAGGACATGTAGCGGCAACAGTTAGTATGTCAAAAGTTGCGGTATCGTTTACACATATTATCAAGAGTGGTGAACCTGCTTTTAGTGTTCTGGTTTCAAGATTTCTTTTGGGTGAGAGCTTCCCTGTGCCTGTCTATCTGTCTTTAATTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATCGGTTTTATGGGAGCTATGATATCGAATTTGGCATTTGTATTCCGTAATATCTTTTCCAAAAAGGGCATGAAGGGAAAGTCTGTCAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTCGCAATTGCTGTGGAAGGACCACAGATGTGGGCTGCTGGATGGCAAACAGCTATGTCTCAAATTGGACCCCAATTCATATGGTGGGTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCGTACATGTCTCTGGATCAGATCTCTCCCTTGACGTTTAGCATTGGAAACACCATGAAACGTATATCTGTCATTGTGTCTTCCATTATTATCTTCCACACACCAGTTCAACCCATCAATGCTCTTGGTGCTGCCATTGCTATCCTTGGAACCTTCTTGTATTCACAGGCGAAACAATAGAGTTGGGGAACTAAGATTCCTCTAGGGACTTGTTTGTTACTGTTCTTCATGCTCAACCACGGACAAGGAAGTTGATTTTGTAATGTGTCACTGCTGGAATTTTGTAATACTAGGATGATCTGGCTGTCAGTCCATCTGTAGATATAATAATAAGAATAATGCTGCTGAGGAAACGTTATCATAATACAGATGATTAGGTTTTTTTTTTTTTTTTTGAATTTCTGAAATGCCAATGATTTGAAATAAATGCCTTTTGTTTATATAGTATGAGAAGAATTTCTCAAGACATTGTTTACTATAAGGAGCTTGCAATAAAGTGATGCCTATGATCAATTTGATGCTCACTTGTCATGATTCACATAATATATAAATGTTTTATGTTGTTAGTT
Coding sequences of Glyma18g12080
>Glyma18g12080.1   sequence type=CDS   gene model=Glyma18g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCTTCGTTGAGACAGCCTGTTGTAGGGATCAGTGGTTCTGATCTTCTTTTGAGGCAAAGACATGCAACTCCAATTAAGGCAAGGTCGTTTTTACCCTCTTTGTCAAGAGAAAAGGGTCAAGGATCTCTTGTTTCAGTTCAAAAGCCACTCCACATTGGTGCTTCTCTTGGTGTTGGAAATTTTGTGTCAGTGAAGAGTGATGCTAAAAGGGGTGATTTGGTGAAGTGTGAGGCCTATGAGGCAGACAGATCAGAGGTTGAGGGTGCAAGCACACCGTCAGAGGCTGCAAAGAAGGTTGCTGTTGCACATACAATAGGACATGTAGCGGCAACAGTTAGTATGTCAAAAGTTGCGGTATCGTTTACACATATTATCAAGAGTGGTGAACCTGCTTTTAGTGTTCTGGTTTCAAGATTTCTTTTGGGTGAGAGCTTCCCTGTGCCTGTCTATCTGTCTTTAATTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATCGGTTTTATGGGAGCTATGATATCGAATTTGGCATTTGTATTCCGTAATATCTTTTCCAAAAAGGGCATGAAGGGAAAGTCTGTCAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTCGCAATTGCTGTGGAAGGACCACAGATGTGGGCTGCTGGATGGCAAACAGCTATGTCTCAAATTGGACCCCAATTCATATGGTGGGTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCGTACATGTCTCTGGATCAGATCTCTCCCTTGACGTTTAGCATTGGAAACACCATGAAACGTATATCTGTCATTGTGTCTTCCATTATTATCTTCCACACACCAGTTCAACCCATCAATGCTCTTGGTGCTGCCATTGCTATCCTTGGAACCTTCTTGTATTCACAGGCGAAACAATAG

>Glyma18g12080.2   sequence type=CDS   gene model=Glyma18g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCTTCGTTGAGACAGCCTGTTGTAGGGATCAGTGGTTCTGATCTTCTTTTGAGGCAAAGACATGCAACTCCAATTAAGGCAAGGTCGTTTTTACCCTCTTTGTCAAGAGAAAAGGGTCAAGGATCTCTTGTTTCAGTTCAAAAGCCACTCCACATTGGTGCTTCTCTTGGTGTTGGAAATTTTGTGTCAGTGAAGAGTGATGCTAAAAGGGGTGATTTGGTGAAGTGTGAGGCCTATGAGGCAGACAGATCAGAGGTTGAGGGTGCAAGCACACCGTCAGAGGCTGCAAAGAAGGTAAAAATTGGGATATATTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTCAATATTTATAACAAGAAGGTTCTGAATGCCTACCCTTACCCTTGGCTTACTTCAACTCTCTCACTTGCATGTGGGTCTCTTATGATGTTGATCTCTTGGGCCACTGGGATTGCAGAAGCCCCCAAGACTGATCCTGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCACATACAATAGGACATGTAGCGGCAACAGTTAGTATGTCAAAAGTTGCGGTATCGTTTACACATATTATCAAGAGTGGTGAACCTGCTTTTAGTGTTCTGGTTTCAAGATTTCTTTTGGGTGAGAGCTTCCCTGTGCCTGTCTATCTGTCTTTAATTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATCGGTTTTATGGGAGCTATGATATCGAATTTGGCATTTGTATTCCGTAATATCTTTTCCAAAAAGGGCATGAAGGGAAAGTCTGTCAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTCGCAATTGCTGTGGAAGGACCACAGATGTGGGCTGCTGGATGGCAAACAGCTATGTCTCAAATTGGACCCCAATTCATATGGTGGGTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCGTACATGTCTCTGGATCAGATCTCTCCCTTGACGTTTAGCATTGGAAACACCATGAAACGTATATCTGTCATTGTGTCTTCCATTATTATCTTCCACACACCAGTTCAACCCATCAATGCTCTTGGTGCTGCCATTGCTATCCTTGGAACCTTCTTGTATTCACAGGCGAAACAATAG
Predicted protein sequences of Glyma18g12080
>Glyma18g12080.1   sequence type=predicted peptide   gene model=Glyma18g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISSLRQPVVGISGSDLLLRQRHATPIKARSFLPSLSREKGQGSLVSVQKPLHIGASLGVGNFVSVKSDAKRGDLVKCEAYEADRSEVEGASTPSEAAKKVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPVPVYLSLIPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPQMWAAGWQTAMSQIGPQFIWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQAKQ*

>Glyma18g12080.2   sequence type=predicted peptide   gene model=Glyma18g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISSLRQPVVGISGSDLLLRQRHATPIKARSFLPSLSREKGQGSLVSVQKPLHIGASLGVGNFVSVKSDAKRGDLVKCEAYEADRSEVEGASTPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATGIAEAPKTDPEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPVPVYLSLIPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPQMWAAGWQTAMSQIGPQFIWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQAKQ*






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