|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G54840 | AT | Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein | chr5:22276611-22278328 REVERSE LENGTH=288 | SoyBase | E_val: 1.00E-105 | ISS |
GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
KOG1673 | KOG | Ras GTPases | JGI | ISS | |
PTHR24073 | Panther | FAMILY NOT NAMED | JGI | ISS | |
PTHR24073:SF279 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF08477 | PFAM | Miro-like protein | JGI | ISS | |
UniRef100_D7MUW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUW9_ARALL | SoyBase | E_val: 4.00E-108 | ISS |
UniRef100_I1N0T2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0T2_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma18g12020 not represented in the dataset |
Glyma18g12020 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.18g102400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g12020.1 sequence type=CDS gene model=Glyma18g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAATCATTGGCAAGAGCAGAAGAAGAAGAACAACGACGACTCAACAACTATGCCACAGAATGGTTCACCATGTCAACGTCCACTGCAACCTGTTCCATAGGGTGTCCTTTCTTGGCCGGTTCATTTGGGACAGGATGCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCGCCACCGCAGGCCACCGTCCACGGTGGCGCCTCCATGCATGGATACCCCTTCACCACCACCACCCCCTCCCCCTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAAACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAAAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACACAGGGTCCCTTTATCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGATTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGCAAGGGCATATGCAAGGGCAATGAATGCTACTCTTTTCTTCTCAAGTGCAACCCACAATATAAATGTCAACAAAATCTTCAAGTTTATCATGGCCAAGCTCTTCAACTTGCCATGGAAAGTGGAACGAAATCTGACACTAGGAGAACCCACAATTGACTTCTGA
>Glyma18g12020.1 sequence type=predicted peptide gene model=Glyma18g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRFIWDRMLLCSLGRPSYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVAILIMFDLTSRCTLNSVVGWYSKARKWNQIAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||