Report for Sequence Feature Glyma18g12020
Feature Type: gene_model
Chromosome: Gm18
Start: 10820694
stop: 10824527
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g12020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G54840 AT
Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein | chr5:22276611-22278328 REVERSE LENGTH=288
SoyBase E_val: 1.00E-105 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG1673
KOG
Ras GTPases
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF279 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF08477 PFAM
Miro-like protein
JGI ISS
UniRef100_D7MUW9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUW9_ARALL
SoyBase E_val: 4.00E-108 ISS
UniRef100_I1N0T2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0T2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g12020
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g12020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g102400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g12020
Coding sequences of Glyma18g12020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g12020.1 sequence type=CDS gene model=Glyma18g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCAAAATCATTGGCAAGAGCAGAAGAAGAAGAACAACGACGACTCAACAACTATGCCACAGAATGGTTCACCATGTCAACGTCCACTGCAACCTGTTCCATAGGGTGTCCTTTCTTGGCCGGTTCATTTGGGACAGGATGCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCGCCACCGCAGGCCACCGTCCACGGTGGCGCCTCCATGCATGGATACCCCTTCACCACCACCACCCCCTCCCCCTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAAACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAAAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACACAGGGTCCCTTTATCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGATTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGCAAGGGCATATGCAAGGGCAATGAATGCTACTCTTTTCTTCTCAAGTGCAACCCACAATATAAATGTCAACAAAATCTTCAAGTTTATCATGGCCAAGCTCTTCAACTTGCCATGGAAAGTGGAACGAAATCTGACACTAGGAGAACCCACAATTGACTTCTGA
Predicted protein sequences of Glyma18g12020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g12020.1 sequence type=predicted peptide gene model=Glyma18g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRFIWDRMLLCSLGRPSYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVAILIMFDLTSRCTLNSVVGWYSKARKWNQIAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
