Glyma18g11983 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g11983): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g11983): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g11983

Feature Type:	gene_model
Chromosome:	Gm18
Start:	10780559
stop:	10786521
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g11983

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10440	AT	Annotation by Michelle Graham. TAIR10: cyclin d4;2 \| chr5:3280611-3282342 REVERSE LENGTH=298	SoyBase	E_val: 3.00E-26	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF76	Panther	CYCLIN-D	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
UniRef100_I1K9N9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9N9_SOYBN	SoyBase	E_val: 1.00E-87	ISS
UniRef100_Q6T2Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin d2 n=1 Tax=Glycine max RepID=Q6T2Z7_SOYBN	SoyBase	E_val: 6.00E-85	ISS

Expression Patterns of Glyma18g11983

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g11983 not represented in the dataset	Glyma18g11983 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g11983 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g102000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g11983

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g11983

Limit To All Plant Sequences

>Glyma18g11983.2   sequence type=transcript   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAACACCGTTTTCGACGAGAGCCATAATAATGGGGGTACGATGATGTCGATGATGGGGATGTGTGAGGACGCGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGTCGTTGATCGGATTCTCAAGATATTATCTAACTTTGGATTTGGTCCTCTATGTGGATATCTATCTATAAATTACTTGGACCGATTCCTTTGTGCATATGACTTACCAGAGCACATGAGCAGCAGTAGGTGACTTGGAGGGAAGTCTTTTGTTGGAGCCGCCAAGCCAATGCGATAACGTTGAAATTTATTTTGGGAAAGAGTTGTATTTTGTTATCAACTCTTCCTTAGTTGGCTCCTTGATTGGGCATGTAAGTCCCAAGTTTATATATATGTAAAAATTGAATTAGTGTTCTGACATGTGAATTATATATTTGTATGTATGTATGTATGTATTCATGTGTTTGTGTGTTCTTTGATTAGTGTATATAGTGAAAAATTTATCATCGTTTTC

>Glyma18g11983.3   sequence type=transcript   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATCTCTTCCTTTTAACAAGTTCATAAAAGAAACTCCACTCGCCTACACACACTGTCACACAGACCCTATCAATAATCTGAAAATAAAGTTTCGTTATTTTTTTTTTAGCGTGAAGAATTTGGAGGAAGAGGGTAGTTGAGTTTCAATTCGAGGTCTTGCAATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAACACCGTTTTCGACGAGAGCCATAATAATGGGGGTACGATGATGTCGATGATGGGGATGTGTGAGGACGCGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGTCGTTGATCGGATTCTCAAGGAGCACATGAGCAGCAGTAGGTGACTTGGAGGGAAGTCTTTTGTTGGAGCCGCCAAGCCAATGCGATAACGTTGAAATTTATTTTGGGAAAGAGTTGTATTTTGTTATCAACTCTTCCTTAGTTGGCTCCTTGATTGGGCATGTAAGTCCCAAGTTTATATATATGTAAAAATTGAATTAGTGTTCTGACATGTGAATTATATATTTGTATGTATGTATGTATGTATTCATGT

Coding sequences of Glyma18g11983

Limit To All Plant Sequences

>Glyma18g11983.1   sequence type=CDS   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAACACCGTTTTCGACGAGAGCCATAATAATGGGGGTACGATGATGTCGATGATGGGGATGTGTGAGGACGCGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGTCGTTGATCGGATTCTCAAGATATTATCTAACTTTGGATTTGGTCCTCTATGTGGATATCTATCTATAAATTACTTGGACCGATTCCTTTGTGCATATGACTTACCAAAAGGAAGAGTTTGGACAATGCAATTAATGGCTGTGGCGTGTTTATCATTAGTTTGGAAAATGTTTTTTATTTTTCTCTCAATGTTTGCAGGTAGGATGGGGTCCAATCACAAGATTAAAAAAAATACATGGGTTTTACTTTGTTACACTGTGATAATTTTTTAG

>Glyma18g11983.2   sequence type=CDS   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAACACCGTTTTCGACGAGAGCCATAATAATGGGGGTACGATGATGTCGATGATGGGGATGTGTGAGGACGCGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGTCGTTGATCGGATTCTCAAGATATTATCTAACTTTGGATTTGGTCCTCTATGTGGATATCTATCTATAAATTACTTGGACCGATTCCTTTGTGCATATGACTTACCAGAGCACATGAGCAGCAGTAGGTGA

>Glyma18g11983.3   sequence type=CDS   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAACACCGTTTTCGACGAGAGCCATAATAATGGGGGTACGATGATGTCGATGATGGGGATGTGTGAGGACGCGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGTCGTTGATCGGATTCTCAAGGAGCACATGAGCAGCAGTAGGTGA

Predicted protein sequences of Glyma18g11983

Limit To All Plant Sequences

>Glyma18g11983.1   sequence type=predicted peptide   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFDFASSLLCTEDNTVFDESHNNGGTMMSMMGMCEDAWSPRKRHFDEEPDELPLLSDESLAMMVEKECQHWPGLRCLNKLQTGDLDFGARMEVVDRILKILSNFGFGPLCGYLSINYLDRFLCAYDLPKGRVWTMQLMAVACLSLVWKMFFIFLSMFAGRMGSNHKIKKNTWVLLCYTVIIF*

>Glyma18g11983.2   sequence type=predicted peptide   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFDFASSLLCTEDNTVFDESHNNGGTMMSMMGMCEDAWSPRKRHFDEEPDELPLLSDESLAMMVEKECQHWPGLRCLNKLQTGDLDFGARMEVVDRILKILSNFGFGPLCGYLSINYLDRFLCAYDLPEHMSSSR*

>Glyma18g11983.3   sequence type=predicted peptide   gene model=Glyma18g11983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFDFASSLLCTEDNTVFDESHNNGGTMMSMMGMCEDAWSPRKRHFDEEPDELPLLSDESLAMMVEKECQHWPGLRCLNKLQTGDLDFGARMEVVDRILKEHMSSSR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain