Glyma18g11960 - SoyBase

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Report for Sequence Feature Glyma18g11960

Feature Type:	gene_model
Chromosome:	Gm18
Start:	10764138
stop:	10767010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g11960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54850	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:22280755-22281363 REVERSE LENGTH=202	SoyBase	E_val: 2.00E-23	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N0S7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0S7_SOYBN	SoyBase	E_val: 2.00E-110	ISS

Expression Patterns of Glyma18g11960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g11960 not represented in the dataset	Glyma18g11960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g11960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g101700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g11960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g11960

Limit To All Plant Sequences

>Glyma18g11960.2   sequence type=transcript   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTATCTTTTTCTTTCCCCTTTCTCTTTTATGTGAGAAAAGCTTATCATCTGGGTCAGTTTCAAGTTTTCAAATTTGAAATGTGAGGAGCTGTGTTAAGGACTGCACTCTAATGCTTCTGAGTTCTGAGTAAGATTTTCTGGCAATATCCTTCTCAAAAGCTTTGAACACTTGGGTTTTTGATTGGAGCTAAGAGGAGCATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAAGGGTGATGTTTTATGTCAGACTTCAGGTTCTTGTAGCTGAAAGCAGAGGTCCCCTTTGGCTTACTGTTGTCAGATACATCGACCACAGAACACATCTTTGTTTGAGACTTGTTCTTCTGTGACCAGTCTTGGGAATTGAATTCCTGCCGGCTATAGTACTCAATTTCTTGCATTAGAAGGGATCCAACTGTGCCTCTGGTGCCTATTTCCACAGGTGGAAATCCAGCCATCTCTTTTGTGTTGCTTGTGGCAAGGATGGTGGGTTTATGCATGCTTTATTTTGTTGGTGTCAAGGAGAAAGCAAAATCTTATGATTTGAGAGGGGCGGTGTGTTGTATTATTTTGGTGATGAACTTTTCCACAAACTGTGGCATTTTTCTTAGGTTTGAAGAGACTTAGTTTCACAAGAACTCTCCACCTTATACTATTTATATGAAGTGCATGGCATCTATTATGTGTATAGTTTTGTAGAGTTAGTTAGTGACACGTCATTCCACTCATGTGCTAGCAGTAAAACACTTGAGCTCCTAACTACTGTACTATCCTTGTAACGTTAAGTTTCAGCAACATGTCTCGGTACTTGCTAATGAGGTAAATTATTTGAGACTATGGTCAATGTAATTTGGACCAGATGGAATTCATGTGAAAGAAAGAGATTGGACTTTCACTTTCATTGACTATTGAGAATGCTGGTGTTAGGTTTTGGTCTCTGAAATGACCGGAACAATAGAAGTCGAGGTGGTTTAGTAAAATGACTATTTATTAGAGTACTTTTCAGGTATTGGATAAGTGTGGATGATTTTATTTTGGCTGGCTGAGATGTATTATATAATTTGGTTTTGTTTTTGGGTTGTGCAGGTGAGTGGGAGAGATATTTAACATTATGCACTCTAGGATAATGCTTTATTTATTCTCAGACTAGGATTTTCAGTTTTCTGATTCCACATTTTATAATTAAAAGATTTAGGAAAATGAAGAGAGCATTGAAGATTTGTTGGCAGGAAAACCAAGTTGAGGGATTCATATTTTTTCCAACACTCAAATTTGCTCATGTTGCATCTTGCGACTGAAAACTGGG

>Glyma18g11960.3   sequence type=transcript   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATTCGCAAACTGATTTGTGATTTTCTGGCAATATCCTTCTCAAAAGCTTTGAACACTTGGGTTTTTGATTGGAGCTAAGAGGAGCATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAAGGGTGATGTTTTATGTCAGACTTCAGGTTCTTGTAGCTGAAAGCAGAGGTCCCCTTTGGCTTACTGTTGTCAGATACATCGACCACAGAACACATCTTTGGTAGGAGCTTGCTACTTTGCTTTTTCTTTGTACTTTCTACTCTGGATACAGTTGTTGGTCTGGAATTAGTACTAACTGAGGAACCCATGTTGATAGTTTGAGACTTGTTCTTCTGTGACCAGTCTTGGGAATTGAATTCCTGCCGGCTATAGTACTCAATTTCTTGCATTAGAAGGGATCCAACTGTGCCTCTGGTGCCTATTTCCACAGGTGGAAATCCAGCCATCTCTTTTGTGTTGCTTGTGGCAAGGATGGTGGGTTTATGCATGCTTTATTTTGTTGGTGTCAAGGAGAAAGCAAAATCTTATGATTTGAGAGGGGCGGTGTGTTGTATTATTTTGGTGATGAACTTTTCCACAAACTGTGGCATTTTTCTTAGGTTTGAAGAGACTTAGTTTCACAAGAACTCTCCACCTTATACTATTTATATGAAGTGCATGGCATCTATTATGTGTATAGTTTTGTAGAGTTAGTTAGTGACACGTCATTCCACTCATGTGCTAGCAGTAAAACACTTGAGCTCCTAACTACTGTACTATCCTTGTAACGTTAAGTTTCAGCAACATGTCTCGGTACTTGCTAATGAGGTAAATTATTTGAGACTATGGTCAATGTAATTTGGACCAGATGGAATTCATGTGAAAGAAAGAGATTGGACTTTCACTTTCATTGACTATTGAGAATGCTGGTGTTAGGTTTTGGTCTCTGAAATGACCGGAACAATAGAAGTCGAGGTGGTTTAGTAAAATGACTATTTATTAGAGTACTTTTCAGGTATTGGATAAGTGTGGATGATTTTATTTTGGCTGGCTGAGATGTATTATATAATTTGGTTTTGTTTTTGGGTTGTGCAGGTGAGTGGGAGAGATATTTAACATTATGCACTCTAGGATAATGCTTTATTTATTCTCAGACTAGGATTTTCAGTTTTCTGATTCCACATTTTATAATTAAAAGATTTAGGAAAATGAAGAGAGCATTGAAGATTTGTTGGCAGGAAAACCAAGTTGAGGGATTCATATTTTTTCCAACACTCAAATTTGCTCATGTTGCATCTTGCGACTGAAAACTGGG

>Glyma18g11960.4   sequence type=transcript   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATTCGCAAACTGATTTGTGATTTTCTGGCAATATCCTTCTCAAAAGCTTTGAACACTTGGGTTTTTGATTGGAGCTAAGAGGAGCATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAAGGGTGATGTTTTATGTCAGACTTCAGGTTCTTGTAGCTGAAAGCAGAGGTCCCCTTTGGCTTACTGTTGTCAGATACATCGACCACAGAACACATCTTTGTTTGAGACTTGTTCTTCTGTGACCAGTCTTGGGAATTGAATTCCTGCCGGCTATAGTACTCAATTTCTTGCATTAGAAGGGATCCAACTGTGCCTCTGGTGCCTATTTCCACAGGTGGAAATCCAGCCATCTCTTTTGTGTTGCTTGTGGCAAGGATGGTGGGTTTATGCATGCTTTATTTTGTTGGTGTCAAGGAGAAAGCAAAATCTTATGATTTGAGAGGGGCGGTGTGTTGTATTATTTTGGTGATGAACTTTTCCACAAACTGTGGCATTTTTCTTAGGTTTGAAGAGACTTAGTTTCACAAGAACTCTCCACCTTATACTATTTATATGAAGTGCATGGCATCTATTATGTGTATAGTTTTGTAGAGTTAGTTAGTGACACGTCATTCCACTCATGTGCTAGCAGTAAAACACTTGAGCTCCTAACTACTGTACTATCCTTGTAACGTTAAGTTTCAGCAACATGTCTCGGTACTTGCTAATGAGGTAAATTATTTGAGACTATGGTCAATGTAATTTGGACCAGATGGAATTCATGTGAAAGAAAGAGATTGGACTTTCACTTTCATTGACTATTGAGAATGCTGGTGTTAGGTTTTGGTCTCTGAAATGACCGGAACAATAGAAGTCGAGGTGGTTTAGTAAAATGACTATTTATTAGAGTACTTTTCAGGTATTGGATAAGTGTGGATGATTTTATTTTGGCTGGCTGAGATGTATTATATAATTTGGTTTTGTTTTTGGGTTGTGCAGGTGAGTGGGAGAGATATTTAACATTATGCACTCTAGGATAATGCTTTATTTATTCTCAGACTAGGATTTTCAGTTTTCTGATTCCACATTTTATAATTAAAAGATTTAGGAAAATGAAGAGAGCATTGAAGATTTGTTGGCAGGAAAACCAAGTTGAGGGATTCATATTTTTTCCAACACTCAAATTTGCTCATGTTGCATCTTGCGACTGAAAACTGGG

Coding sequences of Glyma18g11960

Limit To All Plant Sequences

>Glyma18g11960.1   sequence type=CDS   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAA

>Glyma18g11960.2   sequence type=CDS   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAA

>Glyma18g11960.3   sequence type=CDS   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAA

>Glyma18g11960.4   sequence type=CDS   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATACCAAGGGTGACAAAGGAGCTGTCACAGTAGGAACCACTGGAACAATCAGCTTGTTGATGACAAGGGAATTGGATCAGATGTCTTCTGTTCCACACCAGGAAGTATCTTCAACAAGTAAACCTCGAATTTCAGTTTCGAGTGGTAGTGCTACGCCAAAACGACCACAACCAAGAAAATCATTTGAAGCCAGCAGTAGTAGCAGCAGCAGAAGTAGTAGCATCTTAAACCATATAAGTCCTGGGATTGGCCCCAAAACAAAACTTAATGGCAAACATACCCATCAAATACCCATTCTTGGTTACCAGAACCTTCCACTGGAGACAAGTCCAGTTACGAAGAAAAAGGATAAGAAGAAAAAATCTAAAATTGTTGAAGTAGTGGACATCAAATGTGGCTATGTAGATAAAACTTGGGCTACCCCTATAACAAATTCTCTCAAGAAGTTGGGTTTCTCTAAGCTCTCTGAGAGCATTACCTAA

Predicted protein sequences of Glyma18g11960

Limit To All Plant Sequences

>Glyma18g11960.1   sequence type=predicted peptide   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDTKGDKGAVTVGTTGTISLLMTRELDQMSSVPHQEVSSTSKPRISVSSGSATPKRPQPRKSFEASSSSSSRSSSILNHISPGIGPKTKLNGKHTHQIPILGYQNLPLETSPVTKKKDKKKKSKIVEVVDIKCGYVDKTWATPITNSLKKLGFSKLSESIT*

>Glyma18g11960.2   sequence type=predicted peptide   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDTKGDKGAVTVGTTGTISLLMTRELDQMSSVPHQEVSSTSKPRISVSSGSATPKRPQPRKSFEASSSSSSRSSSILNHISPGIGPKTKLNGKHTHQIPILGYQNLPLETSPVTKKKDKKKKSKIVEVVDIKCGYVDKTWATPITNSLKKLGFSKLSESIT*

>Glyma18g11960.3   sequence type=predicted peptide   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDTKGDKGAVTVGTTGTISLLMTRELDQMSSVPHQEVSSTSKPRISVSSGSATPKRPQPRKSFEASSSSSSRSSSILNHISPGIGPKTKLNGKHTHQIPILGYQNLPLETSPVTKKKDKKKKSKIVEVVDIKCGYVDKTWATPITNSLKKLGFSKLSESIT*

>Glyma18g11960.4   sequence type=predicted peptide   gene model=Glyma18g11960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDTKGDKGAVTVGTTGTISLLMTRELDQMSSVPHQEVSSTSKPRISVSSGSATPKRPQPRKSFEASSSSSSRSSSILNHISPGIGPKTKLNGKHTHQIPILGYQNLPLETSPVTKKKDKKKKSKIVEVVDIKCGYVDKTWATPITNSLKKLGFSKLSESIT*

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