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Report for Sequence Feature Glyma18g11683

Feature Type:gene_model
Chromosome:Gm18
Start:10435871
stop:10439576
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31050AT Annotation by Michelle Graham. TAIR10: Biotin/lipoate A/B protein ligase family | chr4:15114345-15115443 FORWARD LENGTH=278 SoyBaseE_val: 5.00E-118ISS
GO:0006464GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein modification process SoyBaseN/AISS
GO:0009107GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate biosynthetic process SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016415GO-mf Annotation by Michelle Graham. GO Molecular Function: octanoyltransferase activity SoyBaseN/AISS
GO:0017118GO-mf Annotation by Michelle Graham. GO Molecular Function: lipoyltransferase activity SoyBaseN/AISS
KOG0325 KOG Lipoyltransferase JGI ISS
PTHR10993Panther LIPOATE-PROTEIN LIGASE B JGI ISS
PTHR10993:SF0Panther JGI ISS
PF03099PFAM Biotin/lipoate A/B protein ligase family JGI ISS
UniRef100_B9SUW2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipoate-protein ligase B, putative n=1 Tax=Ricinus communis RepID=B9SUW2_RICCO SoyBaseE_val: 9.00E-121ISS
UniRef100_UPI000233E29FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E29F related cluster n=1 Tax=unknown RepID=UPI000233E29F SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g11683 not represented in the dataset

Glyma18g11683 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g42621 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g099900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g11683.2   sequence type=transcript   gene model=Glyma18g11683   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGTGCCGCTTCTGAGATGGTTACTGTGGGGACTGGTAGGTTACCCTGTGTTTGGCGGATTGAGAATTTCAGTTGAAGTTTATTTATTTTACTCTTTGTGTATTGCACATCTGGTTTAGTGTTATGAGACTTTTGTTATTGTCAATGTTATTATTGTTCTTGTTATTGAGCATTGCATGCTATAAGGTTCATTTATTGTTTTCTTTTTAAAAGTTTGATTTTTTCAGAAGAGTGGAGAATGAACGGAGTTATGATTGTTATATTAGTATTGGAAATATGCTTTATGGATAAACCATTATAGACCCTCACAATCATGTTCAATGTCCCTTTTTACAAGATCTGTTTTCTTGAGTGTTTCAGTTTGTTTTCTTAGGGAGTATTGTGTGTGTTGGTGTGACTGGTTATTTTTTAATTTAAACCTTATGAAGTTCTCTTTTTTCTACCCTCTTTTGATGCGAAAAGTTTGCTATTTTTCCAATCTGACGGATTGCAACACGGTTGAACACTGTAAAGTATTTTTCAAAAGGGAAAGATAATTTTTTTTTTCTTTGTTTGGTACTTTGAGGGCTGTTGAAGTTTTATAATATCCTGTTTATTCAGGGTTTTAGGGTTCAAGCGGGTGCTTCTAGCATTGGCCTAGTCTTTTTATTTTTCGTTGATTTCAAATAAATGGGTCGCTTATAGTGGTTGATCATGATTTCCCTTGCTTGTCATGAACGAATTTCCCTATGATGATTTATTATCTTGAAAGTAGTGGACTGAATTTCCTTGAGGAGAAATGAAATCTGAGGGATGTTCAAATCTGTTATTACATATGTTGTTGTTCTTTTGGCGCTTTGTTTAAACATTATGCTGCTTAGCATCCATTCTGAGTCTTAATGTAAAACCTCTAGACAAAATTGTGTAATTTTCTACTGTCTCCATTGTCAATTTGTTTGAAGTATTTTGTGTCACGCACTGTTATAGGCAGTTTAATTCGAGAGTCATATACTACTTGTATAAGCACGGCCCTTAAGATCGCCTTCCTTAATTCTTACCATGGAAGCGTTTCGAGTCATAGCTGTGCAAAATCAATTTAGTTATGGAGGTTTCCCATTAGGGTTTTCCTTCTAGGTCCTCCTTTCCCCCACTTGATTCATATATTAATGAGGCATAGACCCTTTTTACCACTGGACCTGTTACTTGTATCCTATTATTGTTGATCTTATGCAAATGACTTCGTGTCACCATAAGATTCAACTAATAGGAGTTCAGCTCCTTTGGTGCATGATTAATGCCTCAGCTAGCAAGTGGGAACACTTAGTCAAATCTTTCTTAATTTTTGTTGGTTTGTACCTTGATGACTGGTTTGGTGCTTTGCTTTTTCTGCTTTTATTAGTTCTGTTGTGTTTTGAAATGCTATGAAATAGTTTTAAAGAAATAACTAAATTAGTATATTCAATTATTTATCATATGCAGAAAGGCATTGAAAAAGATTGTCCCCCTGTTCTGTTTGCTGGCTCATATTTTTTGCTAATACAAACTCAGGTGCCTATGTTCGCTCTTGTACATTTTTGGGTTGAGCTCATTGATCTCCTCATCCTCTCCATTTTTCTATGATTGCTCCACAGTTTTCACGTTACACTTGGTACCATTTCAGAGAGAGTTAATTATAGAAAATTAGACATGATTTTGTTGGGTACATCTTGTTTCAGCACACTCCCATCAACAGCATCAGCATACTCATCTCTACCTCTAGGGCCATACTTTAAACAGCACAAGCCACTCCTATATTCCAAACCATCCAAATTCAACTCTCTTGTAATCAATGGCCACAGAAGGATCTGTGATCTCTTTGATTTGCACCAGGAGCAAGTACCTTATGAAGTGGCATGGTTTTGGCAAAAGGAGATTGTCAGGGAAAAGAAGGCACAGATTGAAAAGGAAGGAGATTGCACTGACACCCTTATTATTCTACAACATCCTTCTGTTTATACATTAGGTACAGCTAGTACTGAGGGGAACCTCAAGTTTGACATGAAAAATGCTCCCTTTAATATTTATCGCACTGAGCGTGGTGGAGAAGTTACATACCATGGCCCTGGTCAGCTAGTTATGTACCCCATCATCAACCTTCGAAGACACAAGATGGATCTTCATTGGTACCTTAGAACTCTTGAAGAGGTTGTTATTCGTGTTCTTTCTTCAGCATTTTCAATTCAGGCTTCTAGGCTGGAAGGTTTAACTGGTGTTTGGGTTGGAAATGAGAAACTGGCAGCTGTTGGTATCAGAGTGTCTCACTGGATAACCTATCATGGCTTAGCACTTAATGTCACAACAGATTTGTCTCCATTTAAATGGATTGTCCCATGCGGAATACATGATCGTCAAGTAGGAAGCATTAAGGGGTTGGTGAGAGAAGGCAAGCAATGTATTATTGATCATGGAACAACTGATTTGCATCAACTGGATGATGCCAGTCTTATTCATACTACACATAAGTCCTTGATTGAGGAGTTCTCACAAGCATTTCAGCTTGAGTACTGTTACAAAAGTATTTCTGCCGCCCTGTTGTATGAAAGCAAACAAAGCTCTCTCACCAAATAGACACAGCAAAGTTGTATTTGTTTGATATACATAGCAATCCCCTGTCTATTCACTTTTTCCAGATAAAGGGCCAGAGAAAATATCATCACTTTTGCAATAGAAACACTTTTATACTTACGTTCCTGATTACCAATTGCTTGGGAAGAATAGCTAGCTGATTAAGTTATAGATTACTGATGATTAGTTTTATCTACGTTTATTCTAAGCAAGTATATTTGTTGATTTCTGTAAAATTTATCATTGTATAGGCACTTTTCTTGGCTAGTACTAATTTGACAGATACTTAAATTTATCTGTCAATACTAATGTTCGTGACTACGTGCATAACATTTTTTTCCCCTTCAAATTTTTCCTTGTCTTTCATGTATGCAGAAGCATTAACACTCTTGACAATCATTGATCCGGATGGCCAATTCACCAATAAATTTATCAAGATTCTACTCTTCCTATCTGTCCCAACCATTCAACATATTTAAGGGGAATTATCATCGCATAACATCTTGTAAACCTTAAGATTACGA

>Glyma18g11683.1   sequence type=CDS   gene model=Glyma18g11683   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGTTGGGTACATCTTGTTTCAGCACACTCCCATCAACAGCATCAGCATACTCATCTCTACCTCTAGGGCCATACTTTAAACAGCACAAGCCACTCCTATATTCCAAACCATCCAAATTCAACTCTCTTGTAATCAATGGCCACAGAAGGATCTGTGATCTCTTTGATTTGCACCAGGAGCAAGTACCTTATGAAGTGGCATGGTTTTGGCAAAAGGAGATTGTCAGGGAAAAGAAGGCACAGATTGAAAAGGAAGGAGATTGCACTGACACCCTTATTATTCTACAACATCCTTCTGTTTATACATTAGGTACAGCTAGTACTGAGGGGAACCTCAAGTTTGACATGAAAAATGCTCCCTTTAATATTTATCGCACTGAGCGTGGTGGAGAAGTTACATACCATGGCCCTGGTCAGCTAGTTATGTACCCCATCATCAACCTTCGAAGACACAAGATGGATCTTCATTGGTACCTTAGAACTCTTGAAGAGGTTGTTATTCGTGTTCTTTCTTCAGCATTTTCAATTCAGGCTTCTAGGCTGGAAGGTTTAACTGGTGTTTGGGTTGGAAATGAGAAACTGGCAGCTGTTGGTATCAGAGTGTCTCACTGGATAACCTATCATGGCTTAGCACTTAATGTCACAACAGATTTGTCTCCATTTAAATGGATTGTCCCATGCGGAATACATGATCGTCAAGTAGGAAGCATTAAGGGGTTGGTGAGAGAAGGCAAGCAATGTATTATTGATCATGGAACAACTGATTTGCATCAACTGGATGATGCCAGTCTTATTCATACTACACATAAGTCCTTGATTGAGGAGTTCTCACAAGCATTTCAGCTTGAGTACTGTTACAAAAGTATTTCTGCCGCCCTGTTGTATGAAAGCAAACAAAGCTCTCTCACCAAATAG

>Glyma18g11683.2   sequence type=CDS   gene model=Glyma18g11683   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGTTGGGTACATCTTGTTTCAGCACACTCCCATCAACAGCATCAGCATACTCATCTCTACCTCTAGGGCCATACTTTAAACAGCACAAGCCACTCCTATATTCCAAACCATCCAAATTCAACTCTCTTGTAATCAATGGCCACAGAAGGATCTGTGATCTCTTTGATTTGCACCAGGAGCAAGTACCTTATGAAGTGGCATGGTTTTGGCAAAAGGAGATTGTCAGGGAAAAGAAGGCACAGATTGAAAAGGAAGGAGATTGCACTGACACCCTTATTATTCTACAACATCCTTCTGTTTATACATTAGGTACAGCTAGTACTGAGGGGAACCTCAAGTTTGACATGAAAAATGCTCCCTTTAATATTTATCGCACTGAGCGTGGTGGAGAAGTTACATACCATGGCCCTGGTCAGCTAGTTATGTACCCCATCATCAACCTTCGAAGACACAAGATGGATCTTCATTGGTACCTTAGAACTCTTGAAGAGGTTGTTATTCGTGTTCTTTCTTCAGCATTTTCAATTCAGGCTTCTAGGCTGGAAGGTTTAACTGGTGTTTGGGTTGGAAATGAGAAACTGGCAGCTGTTGGTATCAGAGTGTCTCACTGGATAACCTATCATGGCTTAGCACTTAATGTCACAACAGATTTGTCTCCATTTAAATGGATTGTCCCATGCGGAATACATGATCGTCAAGTAGGAAGCATTAAGGGGTTGGTGAGAGAAGGCAAGCAATGTATTATTGATCATGGAACAACTGATTTGCATCAACTGGATGATGCCAGTCTTATTCATACTACACATAAGTCCTTGATTGAGGAGTTCTCACAAGCATTTCAGCTTGAGTACTGTTACAAAAGTATTTCTGCCGCCCTGTTGTATGAAAGCAAACAAAGCTCTCTCACCAAATAG

>Glyma18g11683.1   sequence type=predicted peptide   gene model=Glyma18g11683   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLGTSCFSTLPSTASAYSSLPLGPYFKQHKPLLYSKPSKFNSLVINGHRRICDLFDLHQEQVPYEVAWFWQKEIVREKKAQIEKEGDCTDTLIILQHPSVYTLGTASTEGNLKFDMKNAPFNIYRTERGGEVTYHGPGQLVMYPIINLRRHKMDLHWYLRTLEEVVIRVLSSAFSIQASRLEGLTGVWVGNEKLAAVGIRVSHWITYHGLALNVTTDLSPFKWIVPCGIHDRQVGSIKGLVREGKQCIIDHGTTDLHQLDDASLIHTTHKSLIEEFSQAFQLEYCYKSISAALLYESKQSSLTK*

>Glyma18g11683.2   sequence type=predicted peptide   gene model=Glyma18g11683   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLGTSCFSTLPSTASAYSSLPLGPYFKQHKPLLYSKPSKFNSLVINGHRRICDLFDLHQEQVPYEVAWFWQKEIVREKKAQIEKEGDCTDTLIILQHPSVYTLGTASTEGNLKFDMKNAPFNIYRTERGGEVTYHGPGQLVMYPIINLRRHKMDLHWYLRTLEEVVIRVLSSAFSIQASRLEGLTGVWVGNEKLAAVGIRVSHWITYHGLALNVTTDLSPFKWIVPCGIHDRQVGSIKGLVREGKQCIIDHGTTDLHQLDDASLIHTTHKSLIEEFSQAFQLEYCYKSISAALLYESKQSSLTK*







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